Browse Element(s) Details


Os.9473.1.S1_a_at

Description gb:AK072258.1
DB_XREF= gi:32982281
TID=Os.9473.1
CNT=46
FEA=FLmRNA
TIER=FL+Stack
STK=12
UG=Os.9473 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-121-F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023008K16, full insert sequence.
FL= gb:AK104358.1 gb:AK104515.1 gb:AK072258.1 gb:AK111965.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5142011/11hypersensitive-induced response protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g51380Os.38282.1.S1_at11/115+29376716..29381572expressed protein
LOC_Os05g51380Os.51194.1.A1_x_at1/115+29376716..29381572expressed protein
LOC_Os05g51380Os.18659.1.S1_s_at1/115+29376716..29381572expressed protein
LOC_Os05g51390OsAffx.15193.1.S1_at11/115+29387196..29390727Lysine Decarboxylase, putative, expressed
LOC_Os05g51400OsAffx.15194.1.S1_at11/115+29397661..29401826serine/threonine protein kinase, putative
LOC_Os05g51420Os.9473.2.S1_at11/115+29403457..29408904hypersensitive-induced response protein, putative, expressed
LOC_Os05g51420Os.9473.1.S1_a_at11/115+29403457..29408904hypersensitive-induced response protein, putative, expressed
LOC_Os05g51420Os.9473.2.S2_a_at11/115+29403457..29408904hypersensitive-induced response protein, putative, expressed
LOC_Os05g51420Os.9473.2.S2_at11/115+29403457..29408904hypersensitive-induced response protein, putative, expressed
LOC_Os05g51410OsAffx.15195.1.S1_at11/115+29405111..29409102expressed protein
LOC_Os05g51430OsAffx.15196.1.S1_at11/115+29409666..29410202hypothetical protein
LOC_Os05g51440OsAffx.15197.1.S1_at11/115+29411340..29412432Hsp20/alpha crystallin family protein
LOC_Os05g51450Os.12065.1.S1_at11/115+29412546..29416205ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os05g51460OsAffx.3605.1.S1_at1/115+29419310..29420718retrotransposon protein, putative, LINE subclass
LOC_Os05g51470Os.47949.1.S1_a_at11/115+29423748..29426700expressed protein
LOC_Os05g51480Os.419.1.S1_at11/115+29428627..29436780DNA damage binding protein 1a, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9473.1.S1_a_at--411--2671Chr05:29404085..29404109 (25 bp)
AAGCGGAAGCAAAGTACCTGTCGGG
LOC_Os05g51420
Os.9473.1.S1_a_at--1045--7891Chr05:29404001..29404025 (25 bp)
GGTTCTCAGTGAACGTGCCGGGCAC
LOC_Os05g51420
Os.9473.1.S1_a_at--954--10451Chr05:29403796..29403820 (25 bp)
TTAGCATCCATGTGGGACACCAGCT
LOC_Os05g51420
Os.9473.1.S1_a_at--999--8631Chr05:29403770..29403794 (25 bp)
TGGGATTGCTAAGCTGCTGTTTCTC
LOC_Os05g51420
Os.9473.1.S1_a_at--868--4731Chr05:29403755..29403779 (25 bp)
GCTGTTTCTCTTGATTTGTCCTGTG
LOC_Os05g51420
Os.9473.1.S1_a_at--3--3131Chr05:29403712..29403736 (25 bp)
AATTTCTTCATGCTAGCTGTCCGAC
LOC_Os05g51420
Os.9473.1.S1_a_at--687--1611Chr05:29403698..29403722 (25 bp)
AGCTGTCCGACCGACGTGTGTGCGC
LOC_Os05g51420
Os.9473.1.S1_a_at--403--4571Chr05:29403677..29403701 (25 bp)
GCGCGCGCGGGCAACATTTTCATTT
LOC_Os05g51420
Os.9473.1.S1_a_at--558--8831Chr05:29403642..29403666 (25 bp)
TGATATCCTATCGTGTATGTATGTG
LOC_Os05g51420
Os.9473.1.S1_a_at--39--2011Chr05:29403613..29403637 (25 bp)
ACTATGCCTTGTGAAAACTTTGTGA
LOC_Os05g51420
Os.9473.1.S1_a_at--1011--2291Chr05:29403568..29403592 (25 bp)
AAATGTGCATGTAATCCGGTTCTCT
LOC_Os05g51420
Target Sequence 
AAGCGGAAGCAAAGTACCTGTCGGGGCTGGGTATCGCGAGGCAGCGTCAGGCGATCGTGGATGGGTTGAGGGACAGCGTG
CTGGGGTTCTCAGTGAACGTGCCGGGCACCACGGCCAAGGACGTGATGGACATGGTGCTCATCACCCAGTACTTCGACAC
CATGAAGGAGATCGGCGCCTCCTCAAAGGCCTCCTCCGTCTTCATCCCCCATGGCCCCGGCGCCGTCCGCGACATCGCCA
CGCAGATCCGCGACGGCCTTCTTCAGGGCCAGGCTACCACCACCTCCCATTAGCATCCATGTGGGACACCAGCTGTGGGA
TTGCTAAGCTGCTGTTTCTCTTGATTTGTCCTGTGTGATTAGATATGTCTTGTAATTTCTTCATGCTAGCTGTCCGACCG
ACGTGTGTGCGCGCGCGGGCAACATTTTCATTTTAGTTGTGAATGATATCCTATCGTGTATGTATGTGTGGAACTATGCC
TTGTGAAAACTTTGTGAAATTTCAGCGTCAAACATGTAAATGTGCATGTAATCCGGTTCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9473.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis