Browse Element(s) Details


Os.50191.1.S1_at

Description gb:AK120015.1
DB_XREF= gi:37989638
TID=Os.50191.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50191 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-186-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-186-B06, full insert sequence.
FL= gb:AK120015.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5136010/11dnaK protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g51300OsAffx.27015.1.S1_at11/115+29344790..29347421AC transposase, putative
LOC_Os05g51300OsAffx.27015.1.S1_x_at11/115+29344790..29347421AC transposase, putative
LOC_Os05g51300Os.53746.1.S1_x_at1/115+29344790..29347421AC transposase, putative
LOC_Os05g51310NANA5+29349319..29352505retrotransposon protein, putative, unclassified
LOC_Os05g51320OsAffx.20387.1.S1_x_at3/115+29352960..29356729retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g51330NANA5+29357492..29360518retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g51340Os.26455.2.S1_s_at11/115+29362102..29363633hypothetical protein
LOC_Os05g51340OsAffx.15191.1.S1_at10/115+29362102..29363633hypothetical protein
LOC_Os05g51340OsAffx.32331.1.S1_x_at1/115+29362102..29363633hypothetical protein
LOC_Os05g51350OsAffx.15192.1.S1_at11/115+29365917..29367278Eukaryotic aspartyl protease family protein
LOC_Os05g51360Os.50191.1.S1_at10/115+29372287..29373866dnaK protein, expressed
LOC_Os05g51370OsAffx.4684.1.S1_at11/115+29374916..29375964hypothetical protein
LOC_Os05g51380Os.38282.1.S1_at11/115+29376716..29381572expressed protein
LOC_Os05g51380Os.51194.1.A1_x_at1/115+29376716..29381572expressed protein
LOC_Os05g51380Os.18659.1.S1_s_at1/115+29376716..29381572expressed protein
LOC_Os05g51390OsAffx.15193.1.S1_at11/115+29387196..29390727Lysine Decarboxylase, putative, expressed
LOC_Os05g51400OsAffx.15194.1.S1_at11/115+29397661..29401826serine/threonine protein kinase, putative

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009408biological_processresponse to heat
GO:0005783cellular_componentendoplasmic reticulum
GO:0005788cellular_componentendoplasmic reticulum lumen
GO:0005829cellular_componentcytosol
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50191.1.S1_at--227--1471Chr05:29373356..29373380 (25 bp)
AGAAGGCGTTGAGCTACCAGCAAGA
LOC_Os05g51360
Os.50191.1.S1_at--60--2791Chr05:29373377..29373401 (25 bp)
AAGAGACGGTGGTGACCATGCGCTT
LOC_Os05g51360
Os.50191.1.S1_at--46--5791Chr05:29373412..29373436 (25 bp)
GACGACTTGTTCTCGGAGCCTCTCA
LOC_Os05g51360
Os.50191.1.S1_at--234--911Chr05:29373689..29373713 (25 bp)
AGGCTAGGTACCTCGACCCTTGCTA
LOC_Os05g51360
Os.50191.1.S1_at--284--5811Chr05:29373703..29373727 (25 bp)
GACCCTTGCTACGACTACTGGCATT
LOC_Os05g51360
Os.50191.1.S1_at--952--71Chr05:29373725..29373749 (25 bp)
ATTCCCGCTAATGCTAATGTTCCTC
LOC_Os05g51360
Os.50191.1.S1_at--644--9251Chr05:29373754..29373778 (25 bp)
TCCTCATGCCTCTTACTATTAGCTT
LOC_Os05g51360
Os.50191.1.S1_at--608--10011Chr05:29373773..29373797 (25 bp)
TAGCTTGAGCAATTTCACATCCAAT
LOC_Os05g51360
Os.50191.1.S1_at--266--231Chr05:29373796..29373820 (25 bp)
ATATTGGCTGCCTATATATCCCTCA
LOC_Os05g51360
Os.50191.1.S1_at--469--10151Chr05:29373812..29373836 (25 bp)
TATCCCTCATGCATGTTAACTGTCT
LOC_Os05g51360
Os.50191.1.S1_at--233--5271Chr05:29373854..29373878 (25 bp)
GAATGATGAACTACTGTCTATTGTG
NONE
Target Sequence 
AGAAGGCGTTGAGCTACCAGCAAGAGACGGTGGTGACCATGCGCTTGGACGACGACGACGACTTGTTCTCGGAGCCTCTC
ACGCGCAGCAAGCTGGAGGAGCTGATCGGCGACCTGGTGGGCAGAGCGGTGGACCTGGTGGAGAGCTGCGACGCTAGTGG
CGGCGACGTTGTGGGCGTCGACGAGATCCTGCTGGTGGGTGGAAGCACGAGGATCCCCATGGTCCGCGACCTCGTCAAGG
ACTACTTCCATGGCAAGGAGGCCAGCAACGAGAAGGGCGTGGAGCCTGACGAGGCGGTCATTCGCGGCGCCCTTCTTCTT
TCCCACCCACACCAGGCTAGGTACCTCGACCCTTGCTACGACTACTGGCATTCCCGCTAATGCTAATGTTCCTCCTCCTC
CTCATGCCTCTTACTATTAGCTTGAGCAATTTCACATCCAATATTGGCTGCCTATATATCCCTCATGCATGTTAACTGTC
TTTTAGATCAACATCATCGAATGATGAACTACTGTCTATTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50191.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis