Browse Element(s) Details


Os.53746.1.S1_x_at

Description gb:AK099673.1
DB_XREF= gi:32984882
TID=Os.53746.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53746 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013069E13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013069E13, full insert sequence.
FL= gb:AK099673.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2321011/11AC9 transposase, putative, expressed
LOC_Os05g513001/11AC transposase, putative
LOC_Os05g258001/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23169Os.35362.1.S1_at11/117+13056164..13066591expressed protein
LOC_Os07g23169Os.41695.15.S1_s_at11/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.16376.1.S1_s_at11/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.16375.2.S1_at11/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.16376.1.S1_at9/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.27699.1.S1_at1/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.5264.1.S1_at1/117+13056164..13066591expressed protein
LOC_Os07g23190OsAffx.16377.1.S1_x_at11/117+13070614..13071786lysine ketoglutarate reductase trans-splicing related 1, putative
LOC_Os07g23190OsAffx.16377.1.S1_at11/117+13070614..13071786lysine ketoglutarate reductase trans-splicing related 1, putative
LOC_Os07g23200Os.15319.1.S1_at10/117+13072746..13076810F-actin capping protein alpha subunit, putative, expressed
LOC_Os07g23210Os.53746.1.S1_x_at11/117+13079777..13082896AC9 transposase, putative, expressed
LOC_Os07g23210Os.52686.1.S1_at11/117+13079777..13082896AC9 transposase, putative, expressed
LOC_Os07g23220NANA7+13086472..13091264retrotransposon protein, putative, unclassified
LOC_Os07g23230NANA7+13092773..13094141hypothetical protein
LOC_Os07g23244Os.24393.1.S1_at11/117+13096953..13102081ribosomal protein L23 containing protein, expressed
LOC_Os07g23244OsAffx.28550.1.S1_x_at11/117+13096953..13102081ribosomal protein L23 containing protein, expressed
LOC_Os07g23244OsAffx.5458.1.S1_at1/117+13096953..13102081ribosomal protein L23 containing protein, expressed
LOC_Os07g23260OsAffx.28551.1.S1_at11/117+13103030..13104247hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53746.1.S1_x_at--997--8951Chr07:13080437..13080461 (25 bp)
TGACAATGATGAGCGTCCTGTGAAA
LOC_Os07g23210
Os.53746.1.S1_x_at--1159--1131Chr07:13080482..13080506 (25 bp)
AGTCTGGCAGTACTTCAACAAGGAA
LOC_Os07g23210
Os.53746.1.S1_x_at--1023--1131Chr07:13080597..13080621 (25 bp)
AGTGCCACTGGAACAAGCGGATTTT
LOC_Os07g23210
Os.53746.1.S1_x_at--648--1611Chr07:13080612..13080636 (25 bp)
AGCGGATTTTGGAGCCATCTGAAAT
LOC_Os07g23210
Os.53746.1.S1_x_at--161--391Chr07:13080640..13080664 (25 bp)
ATCACAGTGTTGTCAAAGGGCAGCA
LOC_Os07g23210
Os.53746.1.S1_x_at--219--3073Chr07:13080764..13080788 (25 bp)
AATCATGCATGAGTACCCTTTCAAT
LOC_Os07g23210
Os.53746.1.S1_x_at--993--1791Chr07:13080778..13080802 (25 bp)
ACCCTTTCAATATGGTTGGGCATGA
LOC_Os07g23210
Os.53746.1.S1_x_at--219--7411Chr07:13080811..13080835 (25 bp)
GTGATTTCATTACATCGTTGCGCCC
LOC_Os07g23210
Os.53746.1.S1_x_at--825--10691Chr07:13080828..13080852 (25 bp)
TTGCGCCCTAACTTTCCATTGAAAT
LOC_Os07g23210
Os.53746.1.S1_x_at--737--10671Chr07:13080841..13080865 (25 bp)
TTCCATTGAAATCCCGTGTAACAGT
LOC_Os07g23210
Os.53746.1.S1_x_at--405--5591Chr07:13080932..13080956 (25 bp)
GAAATGCCGCATTAGTGCGACCATG
LOC_Os07g23210
Target Sequence 
TGACAATGATGAGCGTCCTGTGAAAAGGAAAAAATTGACATCAGAAGTCTGGCAGTACTTCAACAAGGAAAAAGTGAGTA
TAGATGAGAATGGTAAGATCTATAAACAGGAGTGGGCACATTGCAAATTCAAGAATTGCACTTACAAAGGTAGATGTGAG
AGTGCCACTGGAACAAGCGGATTTTGGAGCCATCTGAAATTACATCACAGTGTTGTCAAAGGGCAGCAACAACTCAAAGC
TCAGAAGGACCAAGAGAAGGGCATCAACGTTGTTGAACCTTACAAGTATGATGAGGAAGCTAGCTTGAGGAAGTTATATG
TGGCAATAATCATGCATGAGTACCCTTTCAATATGGTTGGGCATGAATATTTTCGTGATTTCATTACATCGTTGCGCCCT
AACTTTCCATTGAAATCCCGTGTAACAGTTAGAAAAGAAATATTGAGCATCTATATGCAGGAAAGGGATAAGTTGTATGA
ATATCTCAAAACTGTGAAATGCCGCATTAGTGCGACCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53746.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis