Browse Element(s) Details


OsAffx.16375.2.S1_at

Description tigr:9635.m02201
TID=OsAffx.16375.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2316911/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23110Os.31900.1.S1_at10/117+13024746..13035421Poly synthetase 1, putative, expressed
LOC_Os07g23110Os.31900.2.S1_x_at10/117+13024746..13035421Poly synthetase 1, putative, expressed
LOC_Os07g23110Os.31900.2.S1_at10/117+13024746..13035421Poly synthetase 1, putative, expressed
LOC_Os07g23120Os.32488.1.S1_at11/117+13035830..13036946expressed protein
LOC_Os07g23130OsAffx.16373.1.S1_at11/117+13039086..13040891hypothetical protein
LOC_Os07g23140OsAffx.22169.1.S1_at11/117+13047554..13047793hypothetical protein
LOC_Os07g23150Os.37141.1.S1_at11/117+13051277..13053598Transferase family protein, expressed
LOC_Os07g23169Os.35362.1.S1_at11/117+13056164..13066591expressed protein
LOC_Os07g23169Os.41695.15.S1_s_at11/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.16376.1.S1_s_at11/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.16375.2.S1_at11/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.16376.1.S1_at9/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.27699.1.S1_at1/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.5264.1.S1_at1/117+13056164..13066591expressed protein
LOC_Os07g23190OsAffx.16377.1.S1_x_at11/117+13070614..13071786lysine ketoglutarate reductase trans-splicing related 1, putative
LOC_Os07g23190OsAffx.16377.1.S1_at11/117+13070614..13071786lysine ketoglutarate reductase trans-splicing related 1, putative
LOC_Os07g23200Os.15319.1.S1_at10/117+13072746..13076810F-actin capping protein alpha subunit, putative, expressed
LOC_Os07g23210Os.53746.1.S1_x_at11/117+13079777..13082896AC9 transposase, putative, expressed
LOC_Os07g23210Os.52686.1.S1_at11/117+13079777..13082896AC9 transposase, putative, expressed
LOC_Os07g23220NANA7+13086472..13091264retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16375.2.S1_at--223--6351Chr07:13057626..13057650 (25 bp)
GATGCGCCTCATGCGTCACAGCCTA
LOC_Os07g23169
OsAffx.16375.2.S1_at--19--2171Chr07:13057609..13057633 (25 bp)
ACAGCCTACCCAATACAACTTACGA
LOC_Os07g23169
OsAffx.16375.2.S1_at--306--6051Chr07:13057477..13057500 (24 bp)
GAGATATACTCAGGGCTTGCAAGCT
LOC_Os07g23169
OsAffx.16375.2.S1_at--195--9911Chr07:13057471..13057495 (25 bp)
TACTCAGGGCTTGCAAGCTATTCGG
LOC_Os07g23169
OsAffx.16375.2.S1_at--795--2391Chr07:13057174..13057194 (21 bp)
AAAAGGAGGTAGAGGTCGGCGCCAG
LOC_Os07g23169
OsAffx.16375.2.S1_at--501--4351Chr07:13057153..13057177 (25 bp)
CCAGCTACCCTGACGTCGTGCTGGG
LOC_Os07g23169
OsAffx.16375.2.S1_at--733--7591Chr07:13057127..13057151 (25 bp)
GGGCAACACCAGCAAATCGGCCGAG
LOC_Os07g23169
OsAffx.16375.2.S1_at--300--2172Chr07:13057122..13057146 (25 bp)
ACACCAGCAAATCGGCCGAGGCAGA
LOC_Os07g23169
OsAffx.16375.2.S1_at--457--3031Chr07:13057113..13057137 (25 bp)
AATCGGCCGAGGCAGAAAGCCTCAG
LOC_Os07g23169
OsAffx.16375.2.S1_at--1026--7631Chr07:13057084..13057108 (25 bp)
GGGAGGGTTGCTGGCACCGTGCTAT
LOC_Os07g23169
OsAffx.16375.2.S1_at--736--3371Chr07:13057047..13057071 (25 bp)
CAGCCACCCGCTCGAGGCAGAAGGT
LOC_Os07g23169
Target Sequence 
GATGCGCCTCATGCGTCACAGCCTACCCAATACAACTTACGATCCACTCGGCCAGCGAAAAAGAGATATACTCAGGGCTT
GCAAGCTATTCGGCGCCAACGGAAAAAGGAGGTAGAGGTCGGCGCCAGCTACCCTGACGTCGTGCTGGGGGGGCAACACC
AGCAAATCGGCCGAGGCAGAAAGCCTCAGGGGTGGGAGGGTTGCTGGCACCGTGCTATGGGGGGCGGCACCAGCCACCCG
CTCGAGGCAGAAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16375.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis