Browse Element(s) Details


Os.31900.1.S1_at

Description gb:AK106540.1
DB_XREF= gi:32991749
TID=Os.31900.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31900 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative NAD+ ADP-ribosyltransferase (OSJNBa0077F02.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-108-D11, full insert sequence.
FL= gb:AK106540.1 gb:AK103479.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2311010/11Poly synthetase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23040NANA7+13000941..13002311retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g23050NANA7+13003018..13006776retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g23060OsAffx.28549.1.S1_s_at11/117+13008128..13009393hypothetical protein
LOC_Os07g23070OsAffx.22722.1.S1_x_at1/117+13010649..13016112retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g23080OsAffx.20628.2.S1_at11/117+13017287..13018624retrotransposon protein, putative, unclassified
LOC_Os07g23080OsAffx.20628.2.S1_x_at11/117+13017287..13018624retrotransposon protein, putative, unclassified
LOC_Os07g23090OsAffx.22171.1.S1_at11/117+13018919..13020408retrotransposon protein, putative, unclassified
LOC_Os07g23100OsAffx.16372.1.S1_at11/117+13022957..13023649hypothetical protein
LOC_Os07g23110Os.31900.1.S1_at10/117+13024746..13035421Poly synthetase 1, putative, expressed
LOC_Os07g23110Os.31900.2.S1_x_at10/117+13024746..13035421Poly synthetase 1, putative, expressed
LOC_Os07g23110Os.31900.2.S1_at10/117+13024746..13035421Poly synthetase 1, putative, expressed
LOC_Os07g23120Os.32488.1.S1_at11/117+13035830..13036946expressed protein
LOC_Os07g23130OsAffx.16373.1.S1_at11/117+13039086..13040891hypothetical protein
LOC_Os07g23140OsAffx.22169.1.S1_at11/117+13047554..13047793hypothetical protein
LOC_Os07g23150Os.37141.1.S1_at11/117+13051277..13053598Transferase family protein, expressed
LOC_Os07g23169Os.35362.1.S1_at11/117+13056164..13066591expressed protein
LOC_Os07g23169Os.41695.15.S1_s_at11/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.16376.1.S1_s_at11/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.16375.2.S1_at11/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.16376.1.S1_at9/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.27699.1.S1_at1/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.5264.1.S1_at1/117+13056164..13066591expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006471biological_processprotein amino acid ADP-ribosylation
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003950molecular_functionNAD+ ADP-ribosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31900.1.S1_at--1105--7511Chr07:13035190..13035214 (25 bp)
GTGGAAGTATCTCCATCGTTATCAG
LOC_Os07g23110
Os.31900.1.S1_at--926--391Chr07:13035210..13035234 (25 bp)
ATCAGTAGTCTGTGGTGGCTACGCT
LOC_Os07g23110
Os.31900.1.S1_at--573--8611Chr07:13035222..13035246 (25 bp)
TGGTGGCTACGCTTTTGATGTGTTA
LOC_Os07g23110
Os.31900.1.S1_at--9--8831Chr07:13035250..13035274 (25 bp)
TGATTTATCCAGTAGTTTCAGGTTG
LOC_Os07g23110
Os.31900.1.S1_at--576--10091Chr07:13035276..13035300 (25 bp)
TAGGAGGTTATGTGCTGCTCGCGTA
LOC_Os07g23110
Os.31900.1.S1_at--67--4991Chr07:13035328..13035352 (25 bp)
GCATCGCGCGAGTGGCGCAAGTAAA
LOC_Os07g23110
Os.31900.1.S1_at--911--2831Chr07:13035346..13035370 (25 bp)
AAGTAAATCCCCTGCGCATGCCATG
LOC_Os07g23110
Os.31900.1.S1_at--618--4271Chr07:13035356..13035380 (25 bp)
CCTGCGCATGCCATGGGCATTTGAT
LOC_Os07g23110
Os.31900.1.S1_at--879--4451Chr07:13035389..13035413 (25 bp)
GCCTAATTTTCTGTGGCAATGTGCG
LOC_Os07g23110
Os.31900.1.S1_at--341--10611Chr07:13035397..13035421 (25 bp)
TTCTGTGGCAATGTGCGCATTTGGC
LOC_Os07g23110
Os.31900.1.S1_at--730--10011Chr07:13035431..13035455 (25 bp)
TAGCTTGCTATTTTATCATCACTCG
NONE
Target Sequence 
GTGGAAGTATCTCCATCGTTATCAGTAGTCTGTGGTGGCTACGCTTTTGATGTGTTAGAATGATTTATCCAGTAGTTTCA
GGTTGGTAGGAGGTTATGTGCTGCTCGCGTATGATCCGTTTTGGGGTATGTTGCATGGGCATCGCGCGAGTGGCGCAAGT
AAATCCCCTGCGCATGCCATGGGCATTTGATAGATGTTTGCCTAATTTTCTGTGGCAATGTGCGCATTTGGCNTCTCTGT
TTAGCTTGCTATTTTATCATCACTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31900.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis