Browse Element(s) Details


OsAffx.16373.1.S1_at

Description tigr:9635.m02197
TID=OsAffx.16373.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2313011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23070OsAffx.22722.1.S1_x_at1/117+13010649..13016112retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g23080OsAffx.20628.2.S1_at11/117+13017287..13018624retrotransposon protein, putative, unclassified
LOC_Os07g23080OsAffx.20628.2.S1_x_at11/117+13017287..13018624retrotransposon protein, putative, unclassified
LOC_Os07g23090OsAffx.22171.1.S1_at11/117+13018919..13020408retrotransposon protein, putative, unclassified
LOC_Os07g23100OsAffx.16372.1.S1_at11/117+13022957..13023649hypothetical protein
LOC_Os07g23110Os.31900.1.S1_at10/117+13024746..13035421Poly synthetase 1, putative, expressed
LOC_Os07g23110Os.31900.2.S1_x_at10/117+13024746..13035421Poly synthetase 1, putative, expressed
LOC_Os07g23110Os.31900.2.S1_at10/117+13024746..13035421Poly synthetase 1, putative, expressed
LOC_Os07g23120Os.32488.1.S1_at11/117+13035830..13036946expressed protein
LOC_Os07g23130OsAffx.16373.1.S1_at11/117+13039086..13040891hypothetical protein
LOC_Os07g23140OsAffx.22169.1.S1_at11/117+13047554..13047793hypothetical protein
LOC_Os07g23150Os.37141.1.S1_at11/117+13051277..13053598Transferase family protein, expressed
LOC_Os07g23169Os.35362.1.S1_at11/117+13056164..13066591expressed protein
LOC_Os07g23169Os.41695.15.S1_s_at11/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.16376.1.S1_s_at11/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.16375.2.S1_at11/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.16376.1.S1_at9/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.27699.1.S1_at1/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.5264.1.S1_at1/117+13056164..13066591expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16373.1.S1_at--1104--3691Chr07:13040796..13040820 (25 bp)
CTATGGGAAGGAGACCGCGGCAGCT
LOC_Os07g23130
OsAffx.16373.1.S1_at--893--4211Chr07:13040782..13040806 (25 bp)
CCGCGGCAGCTGGTGCACAATTGGG
LOC_Os07g23130
OsAffx.16373.1.S1_at--853--6171Chr07:13039633..13039656 (24 bp)
GAGGAGTATAGCTCAAACTAGGGAT
LOC_Os07g23130
OsAffx.16373.1.S1_at--671--9991Chr07:13039625..13039649 (25 bp)
TAGCTCAAACTAGGGATGACAATTT
LOC_Os07g23130
OsAffx.16373.1.S1_at--155--3197Chr08:26095330..26095354 (25 bp)
CAATTTTGCCCATGGGTCCGGGTAT
NONE
OsAffx.16373.1.S1_at--325--3512Chr09:17673787..17673811 (25 bp)
CATGGGTCCGGGTATCCGCAGATAC
NONE
OsAffx.16373.1.S1_at--18--6911Chr07:13039585..13039609 (25 bp)
GTATCCGCAGATACCTGACCCAATA
LOC_Os07g23130
OsAffx.16373.1.S1_at--288--9291Chr07:13039582..13039606 (25 bp)
TCCGCAGATACCTGACCCAATAGGT
LOC_Os07g23130
OsAffx.16373.1.S1_at--440--1771Chr07:13039573..13039597 (25 bp)
ACCTGACCCAATAGGTATGAGCGTG
LOC_Os07g23130
OsAffx.16373.1.S1_at--136--10131Chr07:13039558..13039582 (25 bp)
TATGAGCGTGGGTGTGAATTTTTAC
LOC_Os07g23130
OsAffx.16373.1.S1_at--30--5251Chr07:13039555..13039579 (25 bp)
GAGCGTGGGTGTGAATTTTTACCCG
LOC_Os07g23130
Target Sequence 
CTATGGGAAGGAGACCGCGGCAGCTGGTGCACAATTGGGGGGAGAGGCGATGGTGGAGGAAGAGAAAAGAGAGAAGAGAG
AAGAGAGAAAAGAGATGGGGCAGTGGGCAGTGGGGGAGGGTTGGGGTTTCCTTATTTATAAGTCAAAATTGATGGAATAT
CTGAGGAGTATAGCTCAAACTAGGGATGACAATTTTGCCCATGGGTCCGGGTATCCGCAGATACCTGACCCAATAGGTAT
GAGCGTGGGTGTGAATTTTTACCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16373.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis