Browse Element(s) Details


OsAffx.16372.1.S1_at

Description tigr:9635.m02194
TID=OsAffx.16372.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2310011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23040NANA7+13000941..13002311retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g23050NANA7+13003018..13006776retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g23060OsAffx.28549.1.S1_s_at11/117+13008128..13009393hypothetical protein
LOC_Os07g23070OsAffx.22722.1.S1_x_at1/117+13010649..13016112retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g23080OsAffx.20628.2.S1_at11/117+13017287..13018624retrotransposon protein, putative, unclassified
LOC_Os07g23080OsAffx.20628.2.S1_x_at11/117+13017287..13018624retrotransposon protein, putative, unclassified
LOC_Os07g23090OsAffx.22171.1.S1_at11/117+13018919..13020408retrotransposon protein, putative, unclassified
LOC_Os07g23100OsAffx.16372.1.S1_at11/117+13022957..13023649hypothetical protein
LOC_Os07g23110Os.31900.1.S1_at10/117+13024746..13035421Poly synthetase 1, putative, expressed
LOC_Os07g23110Os.31900.2.S1_x_at10/117+13024746..13035421Poly synthetase 1, putative, expressed
LOC_Os07g23110Os.31900.2.S1_at10/117+13024746..13035421Poly synthetase 1, putative, expressed
LOC_Os07g23120Os.32488.1.S1_at11/117+13035830..13036946expressed protein
LOC_Os07g23130OsAffx.16373.1.S1_at11/117+13039086..13040891hypothetical protein
LOC_Os07g23140OsAffx.22169.1.S1_at11/117+13047554..13047793hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16372.1.S1_at--352--10111Chr07:13023543..13023567 (25 bp)
TATGGCTTGTAGTTGCGGCTGCACC
LOC_Os07g23100
OsAffx.16372.1.S1_at--82--5191Chr07:13023508..13023532 (25 bp)
GCAATGCATGCGTCAAGTCCGTCGT
LOC_Os07g23100
OsAffx.16372.1.S1_at--653--2831Chr07:13023494..13023518 (25 bp)
AAGTCCGTCGTTCAACGCGGCAAAT
LOC_Os07g23100
OsAffx.16372.1.S1_at--540--5131Chr07:13023475..13023499 (25 bp)
GCAAATTCATGTTGGCAGCTACGCC
LOC_Os07g23100
OsAffx.16372.1.S1_at--684--1571Chr07:13023459..13023483 (25 bp)
AGCTACGCCCATTATGCGTCGACAT
LOC_Os07g23100
OsAffx.16372.1.S1_at--459--9171Chr07:13023435..13023455 (21 bp)
TGCCCCTTCCACTAGTTTTGGATTG
LOC_Os07g23100
OsAffx.16372.1.S1_at--651--2191Chr07:13023298..13023322 (25 bp)
ACACACACTGGCGAGGTTTGCTTTA
LOC_Os07g23100
OsAffx.16372.1.S1_at--334--7874Chr08:16809673..16809841 (25 bp)
GGTTTGCTTTACTCTAGTGCAGGTC
NONE
OsAffx.16372.1.S1_at--257--3474Chr09:9765460..9765480 (21 bp)
CAGGGCGTGCTAGTTAGTTTGATCC
NONE
OsAffx.16372.1.S1_at--466--8951Chr07:13023145..13023169 (25 bp)
TGACATATCATTTAGCACCAAGCCG
LOC_Os07g23100
OsAffx.16372.1.S1_at--337--3251Chr07:13023127..13023151 (25 bp)
CAAGCCGATGTAACGCAGGTCAGAT
LOC_Os07g23100
Target Sequence 
TATGGCTTGTAGTTGCGGCTGCACCCGTGCCGTTCGCAATGCATGCGTCAAGTCCGTCGTTCAACGCGGCAAATTCATGT
TGGCAGCTACGCCCATTATGCGTCGACATCACTGCCCCTTCCACTAGTTTTGGATTGGAAGGTGTTGATGTGAAAAACAC
ACACTGGCGAGGTTTGCTTTACTCTAGTGCAGGTCCAAAGATTTGCCTTCAGGTTCAGGGCGTGCTAGTTAGTTTGATCC
TGCAACCAACAAGAAACAAAGAATCCAAAGTTAAATCCATAAACGATAGCCGATCGGCTGGACTGCCGATGACATATCAT
TTAGCACCAAGCCGATGTAACGCAGGTCAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16372.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis