Browse Element(s) Details


OsAffx.28549.1.S1_s_at

Description gb:NM_188154.1
DB_XREF= gi:34903391
GEN=OSJNBa0077F02.3
TID=OsAffx.28549.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (OSJNBa0077F02.3), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2306011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23020OsAffx.10039.1.S1_at1/117+12982661..12983472retrotransposon protein, putative, unclassified
LOC_Os07g23030Os.49802.1.S1_at11/117+12987937..12993843expressed protein
LOC_Os07g23030Os.49802.1.S2_at11/117+12987937..12993843expressed protein
LOC_Os07g23030Os.38764.1.S1_x_at1/117+12987937..12993843expressed protein
LOC_Os07g23030Os.54151.1.S1_x_at1/117+12987937..12993843expressed protein
LOC_Os07g23030OsAffx.28492.1.S1_at1/117+12987937..12993843expressed protein
LOC_Os07g23040NANA7+13000941..13002311retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g23050NANA7+13003018..13006776retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g23060OsAffx.28549.1.S1_s_at11/117+13008128..13009393hypothetical protein
LOC_Os07g23070OsAffx.22722.1.S1_x_at1/117+13010649..13016112retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g23080OsAffx.20628.2.S1_at11/117+13017287..13018624retrotransposon protein, putative, unclassified
LOC_Os07g23080OsAffx.20628.2.S1_x_at11/117+13017287..13018624retrotransposon protein, putative, unclassified
LOC_Os07g23090OsAffx.22171.1.S1_at11/117+13018919..13020408retrotransposon protein, putative, unclassified
LOC_Os07g23100OsAffx.16372.1.S1_at11/117+13022957..13023649hypothetical protein
LOC_Os07g23110Os.31900.1.S1_at10/117+13024746..13035421Poly synthetase 1, putative, expressed
LOC_Os07g23110Os.31900.2.S1_x_at10/117+13024746..13035421Poly synthetase 1, putative, expressed
LOC_Os07g23110Os.31900.2.S1_at10/117+13024746..13035421Poly synthetase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28549.1.S1_s_at--345--3551Chr07:13008618..13008642 (25 bp)
CATCTGGTGTGGCTCTAGTGGACAA
LOC_Os07g23060
OsAffx.28549.1.S1_s_at--1134--5371Chr07:13008593..13008617 (25 bp)
GAAGCAACTTCCTTTGGGCAAGTAC
LOC_Os07g23060
OsAffx.28549.1.S1_s_at--932--3891Chr07:13008565..13008589 (25 bp)
CTGGTGGCTCTGTATCAAACTCTTG
LOC_Os07g23060
OsAffx.28549.1.S1_s_at--202--3291Chr07:13008550..13008574 (25 bp)
CAAACTCTTGGTTCTGCATCAGCTA
LOC_Os07g23060
OsAffx.28549.1.S1_s_at--105--1971Chr07:13008523..13008547 (25 bp)
ACTGTTGTCGATACCGTCATCGGCA
LOC_Os07g23060
OsAffx.28549.1.S1_s_at--246--5391Chr07:13008421..13008445 (25 bp)
GAAGCAAGATTTCCTTCTGCCGACG
LOC_Os07g23060
OsAffx.28549.1.S1_s_at--84--10591Chr07:13008407..13008431 (25 bp)
TTCTGCCGACGATCCAACTGAAGAT
LOC_Os07g23060
OsAffx.28549.1.S1_s_at--115--2331Chr07:13008370..13008394 (25 bp)
AAAGTTTCCACCAGTCGATGCATGT
LOC_Os07g23060
OsAffx.28549.1.S1_s_at--131--1331Chr07:13008338..13008362 (25 bp)
AGAGGCGGCATCTTATGCTGGATCA
LOC_Os07g23060
OsAffx.28549.1.S1_s_at--317--9451Chr07:13008307..13008331 (25 bp)
TCGGCTGAGCTTTTTTCTGATTGGT
LOC_Os07g23060
OsAffx.28549.1.S1_s_at--52--5351Chr07:13008172..13008196 (25 bp)
GAAGTTCTTACAGCAGCCATTTCCC
LOC_Os07g23060
Target Sequence 
CATCTGGTGTGGCTCTAGTGGACAAGAAGCAACTTCCTTTGGGCAAGTACCTCCTGGTGGCTCTGTATCAAACTCTTGGT
TCTGCATCAGCTAAGACTGTTGTCGATACCGTCATCGGCACTGGTGGTCCCTGGTGGCTTTTCCAAGTTTGTTTGAATTT
GCATACCATCAAGGTATCAAAAAGGTCAGCCCTGACTGAAGCAAGATTTCCTTCTGCCGACGATCCAACTGAAGATGATG
ACGGAAATAAAGTTTCCACCAGTCGATGCATGTCCTTTGGAGAGGCGGCATCTTATGCTGGATCAGAGTTGTCGGCTGAG
CTTTTTTCTGATTGGTTCGGTAATTTTTGTGATGGGTATCCAAGGGACTCCAGAATATGGTTTGCTTATGATCATTCCGA
AAATTTTGAGCTTCCGGCTAATTTTAGATTTGACAAAATCAATCATGAAGTTCTTACAGCAGCCATTTCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28549.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis