Browse Element(s) Details


OsAffx.22171.1.S1_at

Description gb:NM_188156.1
DB_XREF= gi:34903395
GEN=OSJNBa0077F02.6
TID=OsAffx.22171.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) similar to gypsy-type retrotransposon protein (OSJNBa0077F02.6), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2309011/11retrotransposon protein, putative, unclassified
LOC_Os04g148701/11retrotransposon protein, putative, unclassified
LOC_Os06g227901/11retrotransposon protein, putative, unclassified
LOC_Os05g433401/11retrotransposon protein, putative, unclassified
LOC_Os06g256301/11retrotransposon protein, putative, unclassified
LOC_Os11g287901/11retrotransposon protein, putative, unclassified
LOC_Os04g296601/11retrotransposon protein, putative, unclassified
LOC_Os09g076901/11retrotransposon protein, putative, unclassified
LOC_Os08g194601/11retrotransposon protein, putative, unclassified
LOC_Os01g231441/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23040NANA7+13000941..13002311retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g23050NANA7+13003018..13006776retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g23060OsAffx.28549.1.S1_s_at11/117+13008128..13009393hypothetical protein
LOC_Os07g23070OsAffx.22722.1.S1_x_at1/117+13010649..13016112retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g23080OsAffx.20628.2.S1_at11/117+13017287..13018624retrotransposon protein, putative, unclassified
LOC_Os07g23080OsAffx.20628.2.S1_x_at11/117+13017287..13018624retrotransposon protein, putative, unclassified
LOC_Os07g23090OsAffx.22171.1.S1_at11/117+13018919..13020408retrotransposon protein, putative, unclassified
LOC_Os07g23100OsAffx.16372.1.S1_at11/117+13022957..13023649hypothetical protein
LOC_Os07g23110Os.31900.1.S1_at10/117+13024746..13035421Poly synthetase 1, putative, expressed
LOC_Os07g23110Os.31900.2.S1_x_at10/117+13024746..13035421Poly synthetase 1, putative, expressed
LOC_Os07g23110Os.31900.2.S1_at10/117+13024746..13035421Poly synthetase 1, putative, expressed
LOC_Os07g23120Os.32488.1.S1_at11/117+13035830..13036946expressed protein
LOC_Os07g23130OsAffx.16373.1.S1_at11/117+13039086..13040891hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22171.1.S1_at--261--6791Chr07:13019744..13019768 (25 bp)
GTTAGTTATTCGCACTTGCTGCCAG
LOC_Os07g23090
OsAffx.22171.1.S1_at--1--4211Chr07:13019938..13019962 (25 bp)
CCCCGCTGGCGAACTGGTCAGGCGA
LOC_Os07g23090
OsAffx.22171.1.S1_at--1023--7171Chr07:13019982..13020006 (25 bp)
GTCTGACACTCAAACAAACACCTCG
LOC_Os07g23090
OsAffx.22171.1.S1_at--1050--2396Chr07:13019997..13020021 (25 bp)
AAACACCTCGAAATCAACCAGTCAG
LOC_Os07g23090
OsAffx.22171.1.S1_at--756--1151Chr07:13020016..13020040 (25 bp)
AGTCAGTCGGACTCCCGCAAGAGGA
LOC_Os07g23090
OsAffx.22171.1.S1_at--906--2216Chr11:16186486..16186510 (25 bp)
ACAACCAAGGCAAACCAATCCGAAG
LOC_Os11g28790
OsAffx.22171.1.S1_at--896--9311Chr07:13020150..13020174 (25 bp)
TCCCATGCCGATTTGGTCCGAGATA
LOC_Os07g23090
OsAffx.22171.1.S1_at--1056--6111Chr07:13020248..13020272 (25 bp)
GAGTGGATTTGTTAACCCTTGCTTC
LOC_Os07g23090
OsAffx.22171.1.S1_at--1135--8671Chr07:13020279..13020303 (25 bp)
TGTGCTTGCTTCTGCCGGTGTGGTT
LOC_Os07g23090
OsAffx.22171.1.S1_at--1069--7499Chr09:8757681..8757704 (23 bp)
GTGGTTTTGCACTGTAGCGGGAAAT
NONE
OsAffx.22171.1.S1_at--976--5352Chr07:13020350..13020374 (25 bp)
GAAGACGAAACGACGCTCCGATTTT
LOC_Os07g23090
Target Sequence 
GTTAGTTATTCGCACTTGCTGCCAGTGGTGCCATACAACGCCTTCAATCCTTCTCCACCGGAATTCGCTTTGATGAAGTC
GGATCCTCCAATTGCTCAACGCCGATCACCCCGCTGGCGAACTGGTCAGGCGAGTGGAGGACCAAAAATTCAGTCTGACA
CTCAAACAAACACCTCGAAATCAACCAGTCAGTCGGACTCCCGCAAGAGGAAATTGGTTCTGAGTGATGATGAAGGCGAT
AATGCTAGAAAATCTGGCAATAAAGAGGTGACCGGGAAACAACCAAGGCAAACCAATCCGAAGAAGAAAACATCCAGTCG
TCCCATGCCGATTTGGTCCGAGATATGGCTGGAAATGGATGGGGATTCGGTGCGGTGGTTGCGTGGAGGGTTTTTGTGGA
GCTCAGGAGGATGGATTGGAGTGGATTTGTTAACCCTTGCTTCCGCCGGTGTGCTTGCTTCTGCCGGTGTGGTTTTGCAC
TGTAGCGGGAAATGGGGAAAGTGGCGAGAGTCTCGGCGGGGAAGACGAAACGACGCTCCGATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22171.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis