Browse Element(s) Details


OsAffx.20628.2.S1_at

Description gb:NM_188155.1
DB_XREF= gi:34903393
GEN=OSJNBa0077F02.5
TID=OsAffx.20628.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) retrotransposon protein-like (OSJNBa0077F02.5), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2308011/11retrotransposon protein, putative, unclassified
LOC_Os11g356903/11retrotransposon protein, putative, unclassified
LOC_Os04g434803/11retrotransposon protein, putative, unclassified
LOC_Os04g296602/11retrotransposon protein, putative, unclassified
LOC_Os03g357102/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g287902/11retrotransposon protein, putative, unclassified
LOC_Os06g227901/11retrotransposon protein, putative, unclassified
LOC_Os05g242401/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23030Os.49802.1.S1_at11/117+12987937..12993843expressed protein
LOC_Os07g23030Os.49802.1.S2_at11/117+12987937..12993843expressed protein
LOC_Os07g23030Os.38764.1.S1_x_at1/117+12987937..12993843expressed protein
LOC_Os07g23030Os.54151.1.S1_x_at1/117+12987937..12993843expressed protein
LOC_Os07g23030OsAffx.28492.1.S1_at1/117+12987937..12993843expressed protein
LOC_Os07g23040NANA7+13000941..13002311retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g23050NANA7+13003018..13006776retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g23060OsAffx.28549.1.S1_s_at11/117+13008128..13009393hypothetical protein
LOC_Os07g23070OsAffx.22722.1.S1_x_at1/117+13010649..13016112retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g23080OsAffx.20628.2.S1_at11/117+13017287..13018624retrotransposon protein, putative, unclassified
LOC_Os07g23080OsAffx.20628.2.S1_x_at11/117+13017287..13018624retrotransposon protein, putative, unclassified
LOC_Os07g23090OsAffx.22171.1.S1_at11/117+13018919..13020408retrotransposon protein, putative, unclassified
LOC_Os07g23100OsAffx.16372.1.S1_at11/117+13022957..13023649hypothetical protein
LOC_Os07g23110Os.31900.1.S1_at10/117+13024746..13035421Poly synthetase 1, putative, expressed
LOC_Os07g23110Os.31900.2.S1_x_at10/117+13024746..13035421Poly synthetase 1, putative, expressed
LOC_Os07g23110Os.31900.2.S1_at10/117+13024746..13035421Poly synthetase 1, putative, expressed
LOC_Os07g23120Os.32488.1.S1_at11/117+13035830..13036946expressed protein
LOC_Os07g23130OsAffx.16373.1.S1_at11/117+13039086..13040891hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20628.2.S1_at--7--7691Chr07:13018433..13018457 (25 bp)
GGGTACAGAACCAAACAAAGATATT
LOC_Os07g23080
OsAffx.20628.2.S1_at--738--10215Chr11:16186876..16187351 (25 bp)
TATTCCTGAAAGAATCCATCTCAGG
LOC_Os11g28790
OsAffx.20628.2.S1_at--825--1872Chr11:20425666..20425690 (25 bp)
ACGAGGCGAAGACCGCGACTCTTGA
LOC_Os11g35690
OsAffx.20628.2.S1_at--795--5711Chr07:13017919..13017943 (25 bp)
GACTCTTGAGAATTTAGTTCCTCAT
LOC_Os07g23080
OsAffx.20628.2.S1_at--238--4351Chr07:13017868..13017892 (25 bp)
CCAGCTGCACAAGGCTAAGGAGCTT
LOC_Os07g23080
OsAffx.20628.2.S1_at--148--5454Chr11:20425818..20425839 (22 bp)
GAACTGAGCGGTTCGTCAAAAGTGC
LOC_Os11g35690
OsAffx.20628.2.S1_at--549--8951Chr07:13017670..13017694 (25 bp)
TGAACTAGAAAAGCGGATCCAAACT
LOC_Os07g23080
OsAffx.20628.2.S1_at--369--8431Chr07:13017631..13017655 (25 bp)
GGCCAAATTGGCGAAACAGAGGGAT
LOC_Os07g23080
OsAffx.20628.2.S1_at--828--6135Chr11:20425781..20426011 (25 bp)
GAGGGATTCGGCTCTGAAAGATGTT
LOC_Os11g35690
OsAffx.20628.2.S1_at--440--112Chr05:13944399..13944419 (21 bp)
ATTCGGCTCTGAAAGATGTTGAAGA
LOC_Os05g24240
OsAffx.20628.2.S1_at--650--4032Chr07:13017494..13017518 (25 bp)
CGATGTCTTGGTCAATAAAATCAAA
LOC_Os07g23080
Target Sequence 
GGGTACAGAACCAAACAAAGATATTCCTGAAAGAATCCATCTCAGGAACGAGGCGAAGACCGCGACTCTTGAGAATTTAG
TTCCTCATCTTGGAACCCTTGAGACCACCAGAAACCAGCTGCACAAGGCTAAGGAGCTTGCCAGGAAAACTGAGCATGAT
CTGAGGGATCGGATCGCCGAGCTTCAAGAATCCAACTTTGAACTGAGCGGTTCGTCAAAAGTGCAAGCCGCCAAGATATC
TGAACTAGAAAAGCGGATCCAAACTCTGGAGAATGACAAGGCCAAATTGGCGAAACAGAGGGATTCGGCTCTGAAAGATG
TTGAAGATCGCAAAATCAAGTCTCAGGCTCAATTCGATGTCTTGGTCAATAAAATCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20628.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis