Browse Element(s) Details


OsAffx.22169.1.S1_at

Description tigr:9635.m02198
TID=OsAffx.22169.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2314011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23100OsAffx.16372.1.S1_at11/117+13022957..13023649hypothetical protein
LOC_Os07g23110Os.31900.1.S1_at10/117+13024746..13035421Poly synthetase 1, putative, expressed
LOC_Os07g23110Os.31900.2.S1_x_at10/117+13024746..13035421Poly synthetase 1, putative, expressed
LOC_Os07g23110Os.31900.2.S1_at10/117+13024746..13035421Poly synthetase 1, putative, expressed
LOC_Os07g23120Os.32488.1.S1_at11/117+13035830..13036946expressed protein
LOC_Os07g23130OsAffx.16373.1.S1_at11/117+13039086..13040891hypothetical protein
LOC_Os07g23140OsAffx.22169.1.S1_at11/117+13047554..13047793hypothetical protein
LOC_Os07g23150Os.37141.1.S1_at11/117+13051277..13053598Transferase family protein, expressed
LOC_Os07g23169Os.35362.1.S1_at11/117+13056164..13066591expressed protein
LOC_Os07g23169Os.41695.15.S1_s_at11/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.16376.1.S1_s_at11/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.16375.2.S1_at11/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.16376.1.S1_at9/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.27699.1.S1_at1/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.5264.1.S1_at1/117+13056164..13066591expressed protein
LOC_Os07g23190OsAffx.16377.1.S1_x_at11/117+13070614..13071786lysine ketoglutarate reductase trans-splicing related 1, putative
LOC_Os07g23190OsAffx.16377.1.S1_at11/117+13070614..13071786lysine ketoglutarate reductase trans-splicing related 1, putative
LOC_Os07g23200Os.15319.1.S1_at10/117+13072746..13076810F-actin capping protein alpha subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22169.1.S1_at--731--1051Chr07:13047594..13047618 (25 bp)
AGGTGTCGGCGCAGTGGCTGTGCAT
LOC_Os07g23140
OsAffx.22169.1.S1_at--811--9351Chr07:13047618..13047642 (25 bp)
TCGAAGGTGGATTAGCGGGTGGTTT
LOC_Os07g23140
OsAffx.22169.1.S1_at--1128--131Chr07:13047628..13047652 (25 bp)
ATTAGCGGGTGGTTTTGCTGAAGCT
LOC_Os07g23140
OsAffx.22169.1.S1_at--712--9111Chr07:13047643..13047667 (25 bp)
TGCTGAAGCTGACATGCACTCTTTG
LOC_Os07g23140
OsAffx.22169.1.S1_at--704--3851Chr07:13047645..13047669 (25 bp)
CTGAAGCTGACATGCACTCTTTGGC
LOC_Os07g23140
OsAffx.22169.1.S1_at--468--5411Chr07:13047647..13047671 (25 bp)
GAAGCTGACATGCACTCTTTGGCGC
LOC_Os07g23140
OsAffx.22169.1.S1_at--685--9531Chr07:13047662..13047686 (25 bp)
TCTTTGGCGCGGGAGAGTATAACAA
LOC_Os07g23140
OsAffx.22169.1.S1_at--573--10231Chr07:13047664..13047688 (25 bp)
TTTGGCGCGGGAGAGTATAACAATG
LOC_Os07g23140
OsAffx.22169.1.S1_at--1062--10152Chr07:13047679..13047703 (25 bp)
TATAACAATGGGTGAAGGCCTAGCC
LOC_Os07g23140
OsAffx.22169.1.S1_at--128--5191Chr07:13047713..13047737 (25 bp)
GCAATGGCGATGACTGTGGGCGCGT
LOC_Os07g23140
OsAffx.22169.1.S1_at--684--5731Chr07:13047724..13047748 (25 bp)
GACTGTGGGCGCGTTTTCCCCTTGG
LOC_Os07g23140
Target Sequence 
AGGTGTCGGCGCAGTGGCTGTGCATCGAAGGTGGATTAGCGGGTGGTTTTGCTGAAGCTGACATGCACTCTTTGGCGCGG
GAGAGTATAACAATGGGTGAAGGCCTAGCCTTCGGGCCGGCAATGGCGATGACTGTGGGCGCGTTTTCCCCTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22169.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis