Browse Element(s) Details


Os.15319.1.S1_at

Description gb:AK108552.1
DB_XREF= gi:32993761
TID=Os.15319.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15319 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative alpha subunit of F-actin capping protein (OSJNBa0077F02.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-144-E06, full insert sequence.
FL= gb:AK108552.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2320010/11F-actin capping protein alpha subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23140OsAffx.22169.1.S1_at11/117+13047554..13047793hypothetical protein
LOC_Os07g23150Os.37141.1.S1_at11/117+13051277..13053598Transferase family protein, expressed
LOC_Os07g23169Os.35362.1.S1_at11/117+13056164..13066591expressed protein
LOC_Os07g23169Os.41695.15.S1_s_at11/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.16376.1.S1_s_at11/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.16375.2.S1_at11/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.16376.1.S1_at9/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.27699.1.S1_at1/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.5264.1.S1_at1/117+13056164..13066591expressed protein
LOC_Os07g23190OsAffx.16377.1.S1_x_at11/117+13070614..13071786lysine ketoglutarate reductase trans-splicing related 1, putative
LOC_Os07g23190OsAffx.16377.1.S1_at11/117+13070614..13071786lysine ketoglutarate reductase trans-splicing related 1, putative
LOC_Os07g23200Os.15319.1.S1_at10/117+13072746..13076810F-actin capping protein alpha subunit, putative, expressed
LOC_Os07g23210Os.53746.1.S1_x_at11/117+13079777..13082896AC9 transposase, putative, expressed
LOC_Os07g23210Os.52686.1.S1_at11/117+13079777..13082896AC9 transposase, putative, expressed
LOC_Os07g23220NANA7+13086472..13091264retrotransposon protein, putative, unclassified
LOC_Os07g23230NANA7+13092773..13094141hypothetical protein
LOC_Os07g23244Os.24393.1.S1_at11/117+13096953..13102081ribosomal protein L23 containing protein, expressed
LOC_Os07g23244OsAffx.28550.1.S1_x_at11/117+13096953..13102081ribosomal protein L23 containing protein, expressed
LOC_Os07g23244OsAffx.5458.1.S1_at1/117+13096953..13102081ribosomal protein L23 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0030036biological_processactin cytoskeleton organization and biogenesis
GO:0008290cellular_componentF-actin capping protein complex
GO:0003779molecular_functionactin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15319.1.S1_at--193--31Chr07:13074343..13074367 (25 bp)
ATTGGCGCTCAATTTGGACTCTGGA
LOC_Os07g23200
Os.15319.1.S1_at--1072--2091Chr07:13074137..13074161 (25 bp)
ACATCGATTGCAAGGATTCCACCAT
LOC_Os07g23200
Os.15319.1.S1_at--248--91NONE
ATTCCACCATATTGCAGTCTCCTGA
NONE
Os.15319.1.S1_at--461--10391Chr07:13073024..13073048 (25 bp)
TTTTCCCATGGCACAACACATTAGC
LOC_Os07g23200
Os.15319.1.S1_at--663--2071Chr07:13073007..13073031 (25 bp)
ACATTAGCCCTCAGCCTTACAAGAG
LOC_Os07g23200
Os.15319.1.S1_at--657--471Chr07:13072900..13072924 (25 bp)
ATCTCCATGCTATGTGTTGTTCTGT
LOC_Os07g23200
Os.15319.1.S1_at--333--6651Chr07:13072885..13072909 (25 bp)
GTTGTTCTGTAGATCCTGCAATTCA
LOC_Os07g23200
Os.15319.1.S1_at--550--9271Chr07:13072872..13072896 (25 bp)
TCCTGCAATTCATATCCTGTAGCCA
LOC_Os07g23200
Os.15319.1.S1_at--667--6971Chr07:13072854..13072878 (25 bp)
GTAGCCAGCAATTCTCTTGTTTTGA
LOC_Os07g23200
Os.15319.1.S1_at--222--3611Chr07:13072839..13072863 (25 bp)
CTTGTTTTGATTTCTGGGCTTCCAC
LOC_Os07g23200
Os.15319.1.S1_at--182--9471Chr07:13072827..13072851 (25 bp)
TCTGGGCTTCCACATATCAGTGTAA
LOC_Os07g23200
Target Sequence 
ATTGGCGCTCAATTTGGACTCTGGAATTCATAGATGGATTACAGCTTGTCGAAATTAAAGGGAAAATACAGGTAGGTGCT
CATTATTNTGAAGAGGGAAATGTGCAGCTGGATACTAACATCGATTGCAAGGATTCCACCATATTGCAGTCTCCTGAGGA
ATGTGCAGTATCAATAACTAACATCATTCGGCATCATGAGTCAGAATATTTGTCATCACTTGAGGAATCATACATGAATT
TGTCTGATGCAACCTTCAAGGATCTTCGAAGGAAACTTCCCGTTACTCGTACTCTTTTCCCATGGCACAACACATTAGCC
CTCAGCCTTACAAGAGACCTCACCAAAGAACTGGCTATAGGAAAATGAAGCTTGTGGAGGTCAGTTCATTAGATTAGCTT
TGATATGGATTTTTTTTTNATCTCCATGCTATGTGTTGTTCTGTAGATCCTGCAATTCATATCCTGTAGCCAGCAATTCT
CTTGTTTTGATTTCTGGGCTTCCACATATCAGTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15319.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis