Browse Element(s) Details


Os.52686.1.S1_at

Description gb:AK068756.1
DB_XREF= gi:32978781
TID=Os.52686.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52686 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013159B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013159B11, full insert sequence.
FL= gb:AK068756.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2321011/11AC9 transposase, putative, expressed
LOC_Os01g582202/11Protein translation factor SUI1 homolog, putative, expressed
LOC_Os11g036501/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23169Os.35362.1.S1_at11/117+13056164..13066591expressed protein
LOC_Os07g23169Os.41695.15.S1_s_at11/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.16376.1.S1_s_at11/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.16375.2.S1_at11/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.16376.1.S1_at9/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.27699.1.S1_at1/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.5264.1.S1_at1/117+13056164..13066591expressed protein
LOC_Os07g23190OsAffx.16377.1.S1_x_at11/117+13070614..13071786lysine ketoglutarate reductase trans-splicing related 1, putative
LOC_Os07g23190OsAffx.16377.1.S1_at11/117+13070614..13071786lysine ketoglutarate reductase trans-splicing related 1, putative
LOC_Os07g23200Os.15319.1.S1_at10/117+13072746..13076810F-actin capping protein alpha subunit, putative, expressed
LOC_Os07g23210Os.53746.1.S1_x_at11/117+13079777..13082896AC9 transposase, putative, expressed
LOC_Os07g23210Os.52686.1.S1_at11/117+13079777..13082896AC9 transposase, putative, expressed
LOC_Os07g23220NANA7+13086472..13091264retrotransposon protein, putative, unclassified
LOC_Os07g23230NANA7+13092773..13094141hypothetical protein
LOC_Os07g23244Os.24393.1.S1_at11/117+13096953..13102081ribosomal protein L23 containing protein, expressed
LOC_Os07g23244OsAffx.28550.1.S1_x_at11/117+13096953..13102081ribosomal protein L23 containing protein, expressed
LOC_Os07g23244OsAffx.5458.1.S1_at1/117+13096953..13102081ribosomal protein L23 containing protein, expressed
LOC_Os07g23260OsAffx.28551.1.S1_at11/117+13103030..13104247hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0003743molecular_functiontranslation initiation factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52686.1.S1_at--1083--6471Chr07:13082185..13082209 (25 bp)
GATACTTATCATGTTCTCTCCTTAC
LOC_Os07g23210
Os.52686.1.S1_at--373--6271Chr07:13082218..13082242 (25 bp)
GATGTGCTGGCTATGCAAGCCTCAA
LOC_Os07g23210
Os.52686.1.S1_at--256--5171Chr07:13082232..13082256 (25 bp)
GCAAGCCTCAACAGTTGCTTCTGAA
LOC_Os07g23210
Os.52686.1.S1_at--335--4491Chr07:13082276..13082300 (25 bp)
GCCGTGTCGTTGATCCATATTGCAG
LOC_Os07g23210
Os.52686.1.S1_at--668--3571Chr07:13082291..13082315 (25 bp)
CATATTGCAGTCGTCTTGATTCTGA
LOC_Os07g23210
Os.52686.1.S1_at--252--2791Chr07:13082454..13082475 (22 bp)
AAGAGATCGTGTTGCCATTCAGTCA
LOC_Os07g23210
Os.52686.1.S1_at--652--7511Chr07:13082479..13082503 (25 bp)
GTGGTTGATCTTGAGCTTGCTGAGC
LOC_Os07g23210
Os.52686.1.S1_at--411--89920Chr12:21296052..21296076 (25 bp)
TGAAGCCATGCCAGCTTGTGAGCTT
NONE
Os.52686.1.S1_at--982--5912Chr07:13082714..13082738 (25 bp)
GAGCTTGGTGTTCAGTGTTCTCGAA
LOC_Os07g23210
Os.52686.1.S1_at--10--5033Chr07:13082784..13082808 (25 bp)
GCAGTAATCCTATCATGTAAGCCAC
LOC_Os07g23210
Os.52686.1.S1_at--919--16919Chr12:21296153..21296177 (25 bp)
AGCCACATTGTATGCTTTAGCCACA
NONE
Target Sequence 
GATACTTATCATGTTCTCTCCTTACTTGCTCGTGATGTGCTGGCTATGCAAGCCTCAACAGTTGCTTCTGAATCGGCCTT
TAGCGCTGGTGGCCGTGTCGTTGATCCATATTGCAGTCGTCTTGATTCTGAAATGGCACAAGCATTGATTTGTACTAAAG
ATTGGATAGCTGGAGTAAGAAGAGATCGTGTTGCCATTCAGTCAATTGTGGTTGATCTTGAGCTTGCTGAGCTTATGGCA
AACAAATTGGTTATTGAGGACGACGATGTAGCTATGTCAATTGATGATGAAATGATGAATGATGTTTGACAAGGAGCTGA
TCAGCTGAAGCCATGCCAGCTTGTGAGCTTGGTGTTCAGTGTTCTCGAAGACTTCAAATCTATATCCTAAAAAAAGTCGG
ACAATATTAGTTATGCAGTAATCCTATCATGTAAGCCACATTGTATGCTTTAGCCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52686.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis