Browse Element(s) Details


Os.7005.1.S1_s_at

Description gb:AK121070.1
DB_XREF= gi:37990693
TID=Os.7005.1
CNT=34
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7005 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023061K04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023061K04, full insert sequence.
FL= gb:AK121070.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5165011/11U6 snRNA-associated Sm-like protein LSm8, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g51620Os.19034.1.S1_at11/115+29512303..29518084expressed protein
LOC_Os05g51620Os.50278.2.S1_at1/115+29512303..29518084expressed protein
LOC_Os05g51630Os.10391.1.S1_a_at11/115+29524916..29533060early-responsive to dehydration protein, putative, expressed
LOC_Os05g51630Os.2259.1.S1_s_at1/115+29524916..29533060early-responsive to dehydration protein, putative, expressed
LOC_Os05g51640Os.4803.1.S1_at11/115+29534432..29539656adhesion regulating molecule family, putative, expressed
LOC_Os05g51650Os.7005.1.S1_s_at11/115+29539790..29541836U6 snRNA-associated Sm-like protein LSm8, putative, expressed
LOC_Os05g51650OsAffx.27407.1.S1_at10/115+29539790..29541836U6 snRNA-associated Sm-like protein LSm8, putative, expressed
LOC_Os05g51660OsAffx.15200.4.A1_at11/115+29541501..29542508SCP-like extracellular protein, expressed
LOC_Os05g51660Os.53200.1.S1_s_at11/115+29541501..29542508SCP-like extracellular protein, expressed
LOC_Os05g51670Os.10131.1.S1_a_at11/115+29548701..29552580UDP-glucose 4-epimerase GEPI48, putative, expressed
LOC_Os05g51680Os.10131.4.A1_at11/115+29551649..29554990SCP-like extracellular protein, expressed
LOC_Os05g51680Os.10131.3.A1_at11/115+29551649..29554990SCP-like extracellular protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005732cellular_componentsmall nucleolar ribonucleoprotein complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7005.1.S1_s_at--182--5251Chr05:29539944..29540073 (25 bp)
GAATCGCTCGTCGACCAGATCATAT
LOC_Os05g51650
Os.7005.1.S1_s_at--817--1711Chr05:29540065..29540086 (22 bp)
ACCAGATCATATCCGTCATCACAAA
LOC_Os05g51650
Os.7005.1.S1_s_at--1067--371Chr05:29540079..29540103 (25 bp)
ATCACAAACGATGGCCGCAACATTG
LOC_Os05g51650
Os.7005.1.S1_s_at--774--8131Chr05:29540200..29540224 (25 bp)
GGACACTCAGAGGATTCGATCAAGC
LOC_Os05g51650
Os.7005.1.S1_s_at--56--6171Chr05:29540209..29540233 (25 bp)
GAGGATTCGATCAAGCCACCAACAT
LOC_Os05g51650
Os.7005.1.S1_s_at--892--411Chr05:29540232..29540256 (25 bp)
ATCATCCTCGATGAGTCCCATGAGA
LOC_Os05g51650
Os.7005.1.S1_s_at--732--4171Chr05:29540248..29540272 (25 bp)
CCCATGAGAGGGTCTATTCTACCAG
LOC_Os05g51650
Os.7005.1.S1_s_at--344--6111Chr05:29541252..29541276 (25 bp)
GAGTGCAACAGCTTGTTCTTGGGTT
LOC_Os05g51650
Os.7005.1.S1_s_at--941--6711Chr05:29541266..29541290 (25 bp)
GTTCTTGGGTTGTACATCATAAGGG
LOC_Os05g51650
Os.7005.1.S1_s_at--254--2571Chr05:29541464..29541488 (25 bp)
AACTGGATGCGAGGCTGGATCTATC
LOC_Os05g51650
Os.7005.1.S1_s_at--243--9551Chr05:29541483..29541507 (25 bp)
TCTATCGAATCTGAGAGCGCACCCG
LOC_Os05g51650
Target Sequence 
GAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCA
AGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGT
TGTACATCATAAGGGGCGACAACATCAGCGTGGTGGGGGAGGTGGATGAAGAACTGGATGCGAGGCTGGATCTATCGAAT
CTGAGAGCGCACCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7005.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis