Browse Element(s) Details


OsAffx.27407.1.S1_at

Description tigr:9633.m04874
TID=OsAffx.27407.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to CG2021-PA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5165010/11U6 snRNA-associated Sm-like protein LSm8, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g51620Os.19034.1.S1_at11/115+29512303..29518084expressed protein
LOC_Os05g51620Os.50278.2.S1_at1/115+29512303..29518084expressed protein
LOC_Os05g51630Os.10391.1.S1_a_at11/115+29524916..29533060early-responsive to dehydration protein, putative, expressed
LOC_Os05g51630Os.2259.1.S1_s_at1/115+29524916..29533060early-responsive to dehydration protein, putative, expressed
LOC_Os05g51640Os.4803.1.S1_at11/115+29534432..29539656adhesion regulating molecule family, putative, expressed
LOC_Os05g51650Os.7005.1.S1_s_at11/115+29539790..29541836U6 snRNA-associated Sm-like protein LSm8, putative, expressed
LOC_Os05g51650OsAffx.27407.1.S1_at10/115+29539790..29541836U6 snRNA-associated Sm-like protein LSm8, putative, expressed
LOC_Os05g51660OsAffx.15200.4.A1_at11/115+29541501..29542508SCP-like extracellular protein, expressed
LOC_Os05g51660Os.53200.1.S1_s_at11/115+29541501..29542508SCP-like extracellular protein, expressed
LOC_Os05g51670Os.10131.1.S1_a_at11/115+29548701..29552580UDP-glucose 4-epimerase GEPI48, putative, expressed
LOC_Os05g51680Os.10131.4.A1_at11/115+29551649..29554990SCP-like extracellular protein, expressed
LOC_Os05g51680Os.10131.3.A1_at11/115+29551649..29554990SCP-like extracellular protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005732cellular_componentsmall nucleolar ribonucleoprotein complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27407.1.S1_at--1011--7131Chr05:29540259..29540585 (25 bp)
GTCTATTCTACCAGGTATGTCCTTG
LOC_Os05g51650
OsAffx.27407.1.S1_at--933--3711Chr05:29540266..29540592 (25 bp)
CTACCAGGTATGTCCTTGTTAATTG
LOC_Os05g51650
OsAffx.27407.1.S1_at--777--10791Chr05:29540583..29540607 (25 bp)
TTGTTAATTGTGACCTTCTCCCTGG
LOC_Os05g51650
OsAffx.27407.1.S1_at--195--10591Chr05:29540598..29540622 (25 bp)
TTCTCCCTGGTTTGCTGTCAAATGC
LOC_Os05g51650
OsAffx.27407.1.S1_at--361--3911Chr05:29540604..29540628 (25 bp)
CTGGTTTGCTGTCAAATGCTCTCAT
LOC_Os05g51650
OsAffx.27407.1.S1_at--999--3011Chr05:29540618..29540642 (25 bp)
AATGCTCTCATTGGTTCACTAGTGC
LOC_Os05g51650
OsAffx.27407.1.S1_at--871--10851Chr05:29540628..29540652 (25 bp)
TTGGTTCACTAGTGCAGAATTCTGC
LOC_Os05g51650
OsAffx.27407.1.S1_at--378--5171Chr05:29540651..29540675 (25 bp)
GCAATCAGCAATAAGTTTCTCTCAT
LOC_Os05g51650
OsAffx.27407.1.S1_at--1001--351Chr05:29540661..29540685 (25 bp)
ATAAGTTTCTCTCATGGTGCTTGAA
LOC_Os05g51650
OsAffx.27407.1.S1_at--899--7771Chr05:29540676..29540700 (25 bp)
GGTGCTTGAAAGTTAGTTGCCAACA
LOC_Os05g51650
OsAffx.27407.1.S1_at--336--10451NONE
TTAGTTGCCAACATGAGGGAGTGCA
NONE
Target Sequence 
GTCTATTCTACCAGGTATGTCCTTGTTAATTGTGACCTTCTCCCTGGTTTGCTGTCAAATGCTCTCATTGGTTCACTAGT
GCAGAATTCTGCAATCAGCAATAAGTTTCTCTCATGGTGCTTGAAAGTTAGTTGCCAACATGAGGGAGTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27407.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis