Browse Element(s) Details


Os.15412.1.S1_x_at

Description gb:AK111398.1
DB_XREF= gi:32996607
TID=Os.15412.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15412 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-182-D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-182-D08, full insert sequence.
FL= gb:AK111398.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1265011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g6693011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g287109/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g204008/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g345608/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g12610NANA5+7218180..7219734retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g12620OsAffx.11392.2.S1_x_at9/115+7222116..7226145retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g12620OsAffx.11392.3.S1_at2/115+7222116..7226145retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g12620OsAffx.11392.1.S1_at1/115+7222116..7226145retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g12620OsAffx.11392.4.S1_s_at1/115+7222116..7226145retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g12630Os.17916.1.S1_at11/115+7229295..7230696expressed protein
LOC_Os05g12630Os.28427.2.S1_x_at1/115+7229295..7230696expressed protein
LOC_Os05g12630OsAffx.26865.1.S1_x_at1/115+7229295..7230696expressed protein
LOC_Os05g12640Os.28427.2.S1_x_at11/115+7234825..7236565BURP domain containing protein, expressed
LOC_Os05g12640Os.28427.1.S2_a_at11/115+7234825..7236565BURP domain containing protein, expressed
LOC_Os05g12640Os.28427.1.S1_x_at11/115+7234825..7236565BURP domain containing protein, expressed
LOC_Os05g12640Os.49997.1.S1_at1/115+7234825..7236565BURP domain containing protein, expressed
LOC_Os05g12650Os.15412.1.S1_x_at11/115+7240951..7244299transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g12650OsAffx.26327.1.S1_at11/115+7240951..7244299transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g12650OsAffx.26327.1.S1_s_at11/115+7240951..7244299transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g12660OsAffx.4317.1.S1_at11/115+7248584..7248835hypothetical protein
LOC_Os05g12670Os.20334.1.S1_at10/115+7251019..7251893expressed protein
LOC_Os05g12670Os.50573.1.S1_at1/115+7251019..7251893expressed protein
LOC_Os05g12680Os.26382.1.S1_at11/115+7258649..7262679Protein kinase domain containing protein, expressed
LOC_Os05g12690OsAffx.14665.1.S1_at10/115+7263245..7265861hypothetical protein
LOC_Os05g12700OsAffx.31892.5.S1_x_at5/115+7267943..7271166hypothetical protein
LOC_Os05g12700OsAffx.31892.5.S1_at4/115+7267943..7271166hypothetical protein
LOC_Os05g12700OsAffx.23366.1.S1_at1/115+7267943..7271166hypothetical protein
LOC_Os05g12700OsAffx.31892.1.S1_x_at1/115+7267943..7271166hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15412.1.S1_x_at--627--7535Chr05:7241737..7241761 (25 bp)
GTGGCTTTCAAGTCCCAAATGGTAA
LOC_Os05g12650
Os.15412.1.S1_x_at--246--7513Chr05:7241779..7241803 (25 bp)
GTGGTTATGCCAACACACCATAGTT
LOC_Os05g12650
Os.15412.1.S1_x_at--183--153Chr05:7241805..7241829 (25 bp)
ATTACTCCTTATCGTGGTGTTCGGT
LOC_Os05g12650
Os.15412.1.S1_x_at--47--8055Chr05:7241879..7241903 (25 bp)
GGAGTTATTCAATCATCGCCATGCC
LOC_Os05g12650
Os.15412.1.S1_x_at--783--535Chr05:7241893..7241917 (25 bp)
ATCGCCATGCCATTCTGAGAAACCA
LOC_Os05g12650
Os.15412.1.S1_x_at--762--5415Chr05:7241945..7241969 (25 bp)
GAAGCGATTTCCCATCCTGAAAGTA
LOC_Os05g12650
Os.15412.1.S1_x_at--264--2335Chr05:7241964..7241988 (25 bp)
AAAGTAGGCACTTTCCATCGGATAA
LOC_Os05g12650
Os.15412.1.S1_x_at--248--5434Chr05:7241990..7242014 (25 bp)
GAACCAAGTGCGGATTCCAGCAGCT
LOC_Os05g12650
Os.15412.1.S1_x_at--539--9114Chr05:7242014..7242038 (25 bp)
TGCTGCGGTGTTCCACAACATGATC
LOC_Os05g12650
Os.15412.1.S1_x_at--638--8874Chr05:7242140..7242164 (25 bp)
TGATGTGCCATCTCTTAGCAATCAA
LOC_Os05g12650
Os.15412.1.S1_x_at--399--8195Chr05:7242212..7242236 (25 bp)
GGAAGATTATGTTCGTAACTAGCAA
LOC_Os05g12650
Target Sequence 
GTGGCTTTCAAGTCCCAAATGGTAAATTTTTTCTAGTAGATGGTGGTTATGCCAACACACCATAGTTCATTACTCCTTAT
CGTGGTGTTCGGTACCATCTAAAGGAGTTTGGACGTGGTCATCGTAGACCTAGAGACTACAAGGAGTTATTCAATCATCG
CCATGCCATTCTGAGAAACCATGTAGAGAGAGCTCTAGGGGTTCTAAAGAAGCGATTTCCCATCCTGAAAGTAGGCACTT
TCCATCGGATAAAGAACCAAGTGCGGATTCCAGCAGCTGCTGCGGTGTTCCACAACATGATCCGGTTGCTTAATGGTGAT
GAGGGCTGGTTGGACAACCAACCTGATAATATAGAACCTACTAATTTTGTCGATCTACCAGAAGGTGACAGTGAATACCG
AAATGATGTGCCATCTCTTAGCAATCAAATGATCAGTGGGAATAATATTAGAGATATGATTGCTAAGAAGATGTGGGAAG
ATTATGTTCGTAACTAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15412.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis