Browse Element(s) Details


Os.17916.1.S1_at

Description gb:AK105947.1
DB_XREF= gi:32991156
TID=Os.17916.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17916 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-307-C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-205-C07, full insert sequence.
FL= gb:AK061473.1 gb:AK109427.2 gb:AK105947.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1263011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g12590OsAffx.14663.1.S1_at11/115+7207573..7207959hypothetical protein
LOC_Os05g12590OsAffx.13464.1.S1_at3/115+7207573..7207959hypothetical protein
LOC_Os05g12600OsAffx.14664.1.S1_at11/115+7211239..7212524hypothetical protein
LOC_Os05g12610NANA5+7218180..7219734retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g12620OsAffx.11392.2.S1_x_at9/115+7222116..7226145retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g12620OsAffx.11392.3.S1_at2/115+7222116..7226145retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g12620OsAffx.11392.1.S1_at1/115+7222116..7226145retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g12620OsAffx.11392.4.S1_s_at1/115+7222116..7226145retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g12630Os.17916.1.S1_at11/115+7229295..7230696expressed protein
LOC_Os05g12630Os.28427.2.S1_x_at1/115+7229295..7230696expressed protein
LOC_Os05g12630OsAffx.26865.1.S1_x_at1/115+7229295..7230696expressed protein
LOC_Os05g12640Os.28427.2.S1_x_at11/115+7234825..7236565BURP domain containing protein, expressed
LOC_Os05g12640Os.28427.1.S2_a_at11/115+7234825..7236565BURP domain containing protein, expressed
LOC_Os05g12640Os.28427.1.S1_x_at11/115+7234825..7236565BURP domain containing protein, expressed
LOC_Os05g12640Os.49997.1.S1_at1/115+7234825..7236565BURP domain containing protein, expressed
LOC_Os05g12650Os.15412.1.S1_x_at11/115+7240951..7244299transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g12650OsAffx.26327.1.S1_at11/115+7240951..7244299transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g12650OsAffx.26327.1.S1_s_at11/115+7240951..7244299transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g12660OsAffx.4317.1.S1_at11/115+7248584..7248835hypothetical protein
LOC_Os05g12670Os.20334.1.S1_at10/115+7251019..7251893expressed protein
LOC_Os05g12670Os.50573.1.S1_at1/115+7251019..7251893expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17916.1.S1_at--215--8711Chr05:7230419..7230443 (25 bp)
TGTGCCACTTCTTGCCACAGGACGA
LOC_Os05g12630
Os.17916.1.S1_at--300--3531Chr05:7230444..7230468 (25 bp)
CATGCTCTGGGTGCGTAACTGAGCG
LOC_Os05g12630
Os.17916.1.S1_at--24--7411Chr05:7230497..7230521 (25 bp)
GTGATCTCAAGATAGCTCCTTCCTA
LOC_Os05g12630
Os.17916.1.S1_at--458--9251Chr05:7230517..7230541 (25 bp)
TCCTATATTTTGGAGCTATATGCGT
LOC_Os05g12630
Os.17916.1.S1_at--892--5911Chr05:7230529..7230553 (25 bp)
GAGCTATATGCGTATCATGTCTTAT
LOC_Os05g12630
Os.17916.1.S1_at--981--9591Chr05:7230553..7230577 (25 bp)
TCATATGTGTATGCGACGACCCGAA
LOC_Os05g12630
Os.17916.1.S1_at--942--7431Chr05:7230559..7230583 (25 bp)
GTGTATGCGACGACCCGAAATGCCA
LOC_Os05g12630
Os.17916.1.S1_at--571--1791Chr05:7230571..7230595 (25 bp)
ACCCGAAATGCCACTACTATACTTG
LOC_Os05g12630
Os.17916.1.S1_at--459--2851Chr05:7230611..7230635 (25 bp)
AAGTCTGCATGTACGATTCATCGAT
LOC_Os05g12630
Os.17916.1.S1_at--124--8771Chr05:7230646..7230670 (25 bp)
TGTATGACAATGTTACACGGTTGTA
LOC_Os05g12630
Os.17916.1.S1_at--315--3331Chr05:7230661..7230685 (25 bp)
CACGGTTGTATACACCACTACGTAA
LOC_Os05g12630
Target Sequence 
TGTGCCACTTCTTGCCACAGGACGACATGCTCTGGGTGCGTAACTGAGCGCGCGCGCGTGAAAGGGGATAAAAATTGTGT
GATCTCAAGATAGCTCCTTCCTATATTTTGGAGCTATATGCGTATCATGTCTTATCATATGTGTATGCGACGACCCGAAA
TGCCACTACTATACTTGTGGCAGCATGTTAATAAGTCTGCATGTACGATTCATCGATCCATACATCTTGTATGACAATGT
TACACGGTTGTATACACCACTACGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17916.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis