Browse Element(s) Details


OsAffx.4317.1.S1_at

Description tigr:9633.m01132
TID=OsAffx.4317.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1266011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g12620OsAffx.11392.2.S1_x_at9/115+7222116..7226145retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g12620OsAffx.11392.3.S1_at2/115+7222116..7226145retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g12620OsAffx.11392.1.S1_at1/115+7222116..7226145retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g12620OsAffx.11392.4.S1_s_at1/115+7222116..7226145retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g12630Os.17916.1.S1_at11/115+7229295..7230696expressed protein
LOC_Os05g12630Os.28427.2.S1_x_at1/115+7229295..7230696expressed protein
LOC_Os05g12630OsAffx.26865.1.S1_x_at1/115+7229295..7230696expressed protein
LOC_Os05g12640Os.28427.2.S1_x_at11/115+7234825..7236565BURP domain containing protein, expressed
LOC_Os05g12640Os.28427.1.S2_a_at11/115+7234825..7236565BURP domain containing protein, expressed
LOC_Os05g12640Os.28427.1.S1_x_at11/115+7234825..7236565BURP domain containing protein, expressed
LOC_Os05g12640Os.49997.1.S1_at1/115+7234825..7236565BURP domain containing protein, expressed
LOC_Os05g12650Os.15412.1.S1_x_at11/115+7240951..7244299transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g12650OsAffx.26327.1.S1_at11/115+7240951..7244299transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g12650OsAffx.26327.1.S1_s_at11/115+7240951..7244299transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g12660OsAffx.4317.1.S1_at11/115+7248584..7248835hypothetical protein
LOC_Os05g12670Os.20334.1.S1_at10/115+7251019..7251893expressed protein
LOC_Os05g12670Os.50573.1.S1_at1/115+7251019..7251893expressed protein
LOC_Os05g12680Os.26382.1.S1_at11/115+7258649..7262679Protein kinase domain containing protein, expressed
LOC_Os05g12690OsAffx.14665.1.S1_at10/115+7263245..7265861hypothetical protein
LOC_Os05g12700OsAffx.31892.5.S1_x_at5/115+7267943..7271166hypothetical protein
LOC_Os05g12700OsAffx.31892.5.S1_at4/115+7267943..7271166hypothetical protein
LOC_Os05g12700OsAffx.23366.1.S1_at1/115+7267943..7271166hypothetical protein
LOC_Os05g12700OsAffx.31892.1.S1_x_at1/115+7267943..7271166hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4317.1.S1_at--651--5031Chr05:7248614..7248638 (25 bp)
GCAGATATGGCCGTGGGATCGGTGT
LOC_Os05g12660
OsAffx.4317.1.S1_at--1032--7351Chr05:7248626..7248650 (25 bp)
GTGGGATCGGTGTGGGCCTCCCCGT
LOC_Os05g12660
OsAffx.4317.1.S1_at--653--3791Chr05:7248643..7248667 (25 bp)
CTCCCCGTGCCCTCAAAATCTGAAG
LOC_Os05g12660
OsAffx.4317.1.S1_at--163--2451Chr05:7248657..7248681 (25 bp)
AAAATCTGAAGGAGGCAGGTCTCCT
LOC_Os05g12660
OsAffx.4317.1.S1_at--751--9471Chr05:7248661..7248685 (25 bp)
TCTGAAGGAGGCAGGTCTCCTTCCT
LOC_Os05g12660
OsAffx.4317.1.S1_at--274--9571Chr05:7248741..7248765 (25 bp)
TCTTCAGTCCAGATGTGGCGGAGTC
LOC_Os05g12660
OsAffx.4317.1.S1_at--878--3651Chr05:7248742..7248766 (25 bp)
CTTCAGTCCAGATGTGGCGGAGTCA
LOC_Os05g12660
OsAffx.4317.1.S1_at--1067--8651Chr05:7248754..7248778 (25 bp)
TGTGGCGGAGTCAGATAGCCTCCTT
LOC_Os05g12660
OsAffx.4317.1.S1_at--45--7551Chr05:7248755..7248779 (25 bp)
GTGGCGGAGTCAGATAGCCTCCTTC
LOC_Os05g12660
OsAffx.4317.1.S1_at--1005--8351Chr05:7248757..7248781 (25 bp)
GGCGGAGTCAGATAGCCTCCTTCCT
LOC_Os05g12660
OsAffx.4317.1.S1_at--117--4691Chr05:7248758..7248782 (25 bp)
GCGGAGTCAGATAGCCTCCTTCCTC
LOC_Os05g12660
Target Sequence 
GCAGATATGGCCGTGGGATCGGTGTGGGCCTCCCCGTGCCCTCAAAATCTGAAGGAGGCAGGTCTCCTTCCTCCTTCCTC
CTCGTCTAGCCGCTGCCGTGGCGGAGGCCGACCCTTGGCCTCCTTCCTCTTCAGTCCAGATGTGGCGGAGTCAGATAGCC
TCCTTCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4317.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis