Browse Element(s) Details


OsAffx.14665.1.S1_at

Description tigr:9633.m01135
TID=OsAffx.14665.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1269010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g12650Os.15412.1.S1_x_at11/115+7240951..7244299transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g12650OsAffx.26327.1.S1_at11/115+7240951..7244299transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g12650OsAffx.26327.1.S1_s_at11/115+7240951..7244299transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g12660OsAffx.4317.1.S1_at11/115+7248584..7248835hypothetical protein
LOC_Os05g12670Os.20334.1.S1_at10/115+7251019..7251893expressed protein
LOC_Os05g12670Os.50573.1.S1_at1/115+7251019..7251893expressed protein
LOC_Os05g12680Os.26382.1.S1_at11/115+7258649..7262679Protein kinase domain containing protein, expressed
LOC_Os05g12690OsAffx.14665.1.S1_at10/115+7263245..7265861hypothetical protein
LOC_Os05g12700OsAffx.31892.5.S1_x_at5/115+7267943..7271166hypothetical protein
LOC_Os05g12700OsAffx.31892.5.S1_at4/115+7267943..7271166hypothetical protein
LOC_Os05g12700OsAffx.23366.1.S1_at1/115+7267943..7271166hypothetical protein
LOC_Os05g12700OsAffx.31892.1.S1_x_at1/115+7267943..7271166hypothetical protein
LOC_Os05g12710Os.26698.4.S1_s_at11/115+7277951..7278365hypothetical protein
LOC_Os05g12710Os.26698.4.S1_x_at2/115+7277951..7278365hypothetical protein
LOC_Os05g12720OsAffx.20017.1.S1_at5/115+7283836..7284738hypothetical protein
LOC_Os05g12730NANA5+7285125..7287154hypothetical protein
LOC_Os05g12740NANA5+7287485..7290549transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14665.1.S1_at--608--4651NONE
GCGTGGACGCCGAAAGGGCTTCCTA
NONE
OsAffx.14665.1.S1_at--29--2891Chr05:7264445..7264469 (25 bp)
AAGGGCTTCCTAAGCTTGGCTTCGG
LOC_Os05g12690
OsAffx.14665.1.S1_at--122--5371Chr05:7264529..7264553 (25 bp)
GAAGAGCTCGGCTCTTCTGCCGTCT
LOC_Os05g12690
OsAffx.14665.1.S1_at--1065--4231Chr05:7264548..7264572 (25 bp)
CCGTCTCCTTCAACAGCAACAAAAT
LOC_Os05g12690
OsAffx.14665.1.S1_at--156--2251Chr05:7264569..7264593 (25 bp)
AAATTCATGCATACGGTAGGCTTCG
LOC_Os05g12690
OsAffx.14665.1.S1_at--328--4951Chr05:7264577..7264601 (25 bp)
GCATACGGTAGGCTTCGATCATACA
LOC_Os05g12690
OsAffx.14665.1.S1_at--280--10631Chr05:7264590..7264614 (25 bp)
TTCGATCATACAAGCGGGAGGTGGA
LOC_Os05g12690
OsAffx.14665.1.S1_at--1060--5571Chr05:7265771..7265795 (25 bp)
GAAATGGACCATTTTCTCGGCGTCT
LOC_Os05g12690
OsAffx.14665.1.S1_at--657--171Chr05:7265781..7265805 (25 bp)
ATTTTCTCGGCGTCTGATACTGAGG
LOC_Os05g12690
OsAffx.14665.1.S1_at--342--8371Chr05:7265789..7265813 (25 bp)
GGCGTCTGATACTGAGGTCGAACAT
LOC_Os05g12690
OsAffx.14665.1.S1_at--826--1031Chr05:7265803..7265827 (25 bp)
AGGTCGAACATCTCAGCGCCAACGA
LOC_Os05g12690
Target Sequence 
GCGTGGACGCCGAAAGGGCTTCCTAAGCTTGGCTTCGGCGAGGGCAGCGCAGCATCAGCCGCTACAACAGGGGCGGAAGA
GAGCTAGGGATGCTGGGGAAGAGCTCGGCTCTTCTGCCGTCTCCTTCAACAGCAACAAAATTCATGCATACGGTAGGCTT
CGATCATACAAGCGGGAGGTGGAGATGAAATGGACCATTTTCTCGGCGTCTGATACTGAGGTCGAACATCTCAGCGCCAA
CGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14665.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis