Browse Element(s) Details


Os.26382.1.S1_at

Description gb:CB680782
DB_XREF= gi:29684507
DB_XREF=OSJNEf06C06.r
CLONE=OSJNEf06C06
TID=Os.26382.1
CNT=13
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.26382 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 20960 putative receptor protein kinase mRNA, partial cds
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1268011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g12640Os.28427.2.S1_x_at11/115+7234825..7236565BURP domain containing protein, expressed
LOC_Os05g12640Os.28427.1.S2_a_at11/115+7234825..7236565BURP domain containing protein, expressed
LOC_Os05g12640Os.28427.1.S1_x_at11/115+7234825..7236565BURP domain containing protein, expressed
LOC_Os05g12640Os.49997.1.S1_at1/115+7234825..7236565BURP domain containing protein, expressed
LOC_Os05g12650Os.15412.1.S1_x_at11/115+7240951..7244299transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g12650OsAffx.26327.1.S1_at11/115+7240951..7244299transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g12650OsAffx.26327.1.S1_s_at11/115+7240951..7244299transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g12660OsAffx.4317.1.S1_at11/115+7248584..7248835hypothetical protein
LOC_Os05g12670Os.20334.1.S1_at10/115+7251019..7251893expressed protein
LOC_Os05g12670Os.50573.1.S1_at1/115+7251019..7251893expressed protein
LOC_Os05g12680Os.26382.1.S1_at11/115+7258649..7262679Protein kinase domain containing protein, expressed
LOC_Os05g12690OsAffx.14665.1.S1_at10/115+7263245..7265861hypothetical protein
LOC_Os05g12700OsAffx.31892.5.S1_x_at5/115+7267943..7271166hypothetical protein
LOC_Os05g12700OsAffx.31892.5.S1_at4/115+7267943..7271166hypothetical protein
LOC_Os05g12700OsAffx.23366.1.S1_at1/115+7267943..7271166hypothetical protein
LOC_Os05g12700OsAffx.31892.1.S1_x_at1/115+7267943..7271166hypothetical protein
LOC_Os05g12710Os.26698.4.S1_s_at11/115+7277951..7278365hypothetical protein
LOC_Os05g12710Os.26698.4.S1_x_at2/115+7277951..7278365hypothetical protein
LOC_Os05g12720OsAffx.20017.1.S1_at5/115+7283836..7284738hypothetical protein
LOC_Os05g12730NANA5+7285125..7287154hypothetical protein
LOC_Os05g12740NANA5+7287485..7290549transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26382.1.S1_at--1048--7751Chr05:7259217..7259241 (25 bp)
GGTGACGTGTCTTTGGAGGATCTTA
LOC_Os05g12680
Os.26382.1.S1_at--894--8591Chr05:7259176..7259200 (25 bp)
TGGTCACAGCCGCTATTTTGGATCG
LOC_Os05g12680
Os.26382.1.S1_at--261--171Chr05:7259162..7259186 (25 bp)
ATTTTGGATCGTACAGCAGCTCTGA
LOC_Os05g12680
Os.26382.1.S1_at--1044--1571Chr05:7259145..7259169 (25 bp)
AGCTCTGACTATGATTCTGGCCAAT
LOC_Os05g12680
Os.26382.1.S1_at--384--1871Chr05:7259067..7259091 (25 bp)
ACGAGCAGTCAATACAGCGCACCAA
LOC_Os05g12680
Os.26382.1.S1_at--210--1651Chr05:7259040..7259064 (25 bp)
AGCGAGTATGGCCAGATACCCTCTG
LOC_Os05g12680
Os.26382.1.S1_at--311--8311Chr05:7258956..7258980 (25 bp)
GGCTACAGTGGCTACAGCTCAGGAT
LOC_Os05g12680
Os.26382.1.S1_at--1000--2851Chr05:7258864..7258888 (25 bp)
AAGTCCATCTGAGTTCGTATGACCA
LOC_Os05g12680
Os.26382.1.S1_at--388--2331Chr05:7258840..7258864 (25 bp)
AAAGTTGCTGACTTGCGTGCGATGC
LOC_Os05g12680
Os.26382.1.S1_at--888--7291Chr05:7258824..7258848 (25 bp)
GTGCGATGCGATGAACCGTAAGTTT
LOC_Os05g12680
Os.26382.1.S1_at--177--4371Chr05:7258724..7258748 (25 bp)
CCACCCGTTTGCCTATGTAATTCAA
LOC_Os05g12680
Target Sequence 
GGTGACGTGTCTTTGGAGGATCTTAATGAAGGTGTTCGGCCTGGTCACAGCCGCTATTTTGGATCGTACAGCAGCTCTGA
CTATGATTCTGGCCAATACAACGAGGACATGAAGAAGTTCAGGAAGATGGCTTTTACCAACAATAATGATACGAGCAGTC
AATACAGCGCACCAACCAGCGAGTATGGCCAGATACCCTCTGCATCAAGCAGCGAGGGCCAACAAACCCAGGAAGTCGAG
AGCAGGACAACCAAGAGAGGCGGCTACAGTGGCTACAGCTCAGGATACAGCGGAGCCTCATGAGGGAAATCTTTGTTTTT
CCTCTTTTAACATTTTGATTGTTTCAATCTGTAAAGTCCATCTGAGTTCGTATGACCAAAGTTGCTGACTTGCGTGCGAT
GCGATGAACCGTAAGTTTGACCGAAGTATAGCTTTTGGTAGCTACAATTGTTGATTCTTTCATAAGTATTATGNTATGGA
TGTGTTCCACCACCCACCCGTTTGCCTATGTAATTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26382.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis