Browse Element(s) Details


Os.20334.1.S1_at

Description gb:AK108327.1
DB_XREF= gi:32993536
TID=Os.20334.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20334 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-141-H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-141-H08, full insert sequence.
FL= gb:AK108327.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1267010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g12620OsAffx.11392.2.S1_x_at9/115+7222116..7226145retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g12620OsAffx.11392.3.S1_at2/115+7222116..7226145retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g12620OsAffx.11392.1.S1_at1/115+7222116..7226145retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g12620OsAffx.11392.4.S1_s_at1/115+7222116..7226145retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g12630Os.17916.1.S1_at11/115+7229295..7230696expressed protein
LOC_Os05g12630Os.28427.2.S1_x_at1/115+7229295..7230696expressed protein
LOC_Os05g12630OsAffx.26865.1.S1_x_at1/115+7229295..7230696expressed protein
LOC_Os05g12640Os.28427.2.S1_x_at11/115+7234825..7236565BURP domain containing protein, expressed
LOC_Os05g12640Os.28427.1.S2_a_at11/115+7234825..7236565BURP domain containing protein, expressed
LOC_Os05g12640Os.28427.1.S1_x_at11/115+7234825..7236565BURP domain containing protein, expressed
LOC_Os05g12640Os.49997.1.S1_at1/115+7234825..7236565BURP domain containing protein, expressed
LOC_Os05g12650Os.15412.1.S1_x_at11/115+7240951..7244299transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g12650OsAffx.26327.1.S1_at11/115+7240951..7244299transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g12650OsAffx.26327.1.S1_s_at11/115+7240951..7244299transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g12660OsAffx.4317.1.S1_at11/115+7248584..7248835hypothetical protein
LOC_Os05g12670Os.20334.1.S1_at10/115+7251019..7251893expressed protein
LOC_Os05g12670Os.50573.1.S1_at1/115+7251019..7251893expressed protein
LOC_Os05g12680Os.26382.1.S1_at11/115+7258649..7262679Protein kinase domain containing protein, expressed
LOC_Os05g12690OsAffx.14665.1.S1_at10/115+7263245..7265861hypothetical protein
LOC_Os05g12700OsAffx.31892.5.S1_x_at5/115+7267943..7271166hypothetical protein
LOC_Os05g12700OsAffx.31892.5.S1_at4/115+7267943..7271166hypothetical protein
LOC_Os05g12700OsAffx.23366.1.S1_at1/115+7267943..7271166hypothetical protein
LOC_Os05g12700OsAffx.31892.1.S1_x_at1/115+7267943..7271166hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20334.1.S1_at--374--10571Chr05:7251557..7251581 (25 bp)
TTCTTCTTCGCAAGCTGAGGAAGCC
LOC_Os05g12670
Os.20334.1.S1_at--187--4311Chr05:7251399..7251423 (25 bp)
GCCACTACTACTAACCCGAAGGAGG
LOC_Os05g12670
Os.20334.1.S1_at--66--6231Chr05:7251378..7251402 (25 bp)
GAGGCCGCACGGAAGTACCTGAACA
LOC_Os05g12670
Os.20334.1.S1_at--415--9971Chr05:7251363..7251387 (25 bp)
TACCTGAACAAGATCGCGACGAGCC
LOC_Os05g12670
Os.20334.1.S1_at--432--6151Chr05:7251323..7251347 (25 bp)
GAGGTCCAGACCCAGCAGCAATGGT
LOC_Os05g12670
Os.20334.1.S1_at--382--8231Chr05:7251276..7251300 (25 bp)
GGCAAGACGAAGACGAGCCGCTCCT
LOC_Os05g12670
Os.20334.1.S1_at--524--3411Chr05:7251204..7251228 (25 bp)
CAGCACTTGCAGGACGGCATCGAGA
LOC_Os05g12670
Os.20334.1.S1_at--46--3531Chr05:7251083..7251107 (25 bp)
CATGATGATGTGTTCCTCGCAGTGA
LOC_Os05g12670
Os.20334.1.S1_at--375--2931Chr05:7251049..7251073 (25 bp)
AAGGCTTTGTTCTTGGCATAGACGA
LOC_Os05g12670
Os.20334.1.S1_at--408--6691Chr05:7251024..7251048 (25 bp)
GTTGCCAAATAATCGCATTCGTTTT
LOC_Os05g12670
Os.20334.1.S1_at--820--4911Chr05:7251010..7251034 (25 bp)
GCATTCGTTTTTCATTAAATCCCTT
NONE
Target Sequence 
TTCTTCTTCGCAAGCTGAGGAAGCCGAAGGCGGCCGGCGGCGNNNGNNNGNNGTNNCCGGAGGGACNGAGCGGCCGATTC
TTGGCGAAGGTCCGGGCGGACTCGATGCCGCGGCTGGAGGCGCGCGCGATCGCCGGNCGGCGAGGAGGAGCGGCGCGCCG
CCACTACTACTAACCCGAAGGAGGCCGCACGGAAGTACCTGAACAAGATCGCGACGAGCCTCGCGCGCCGCCGCGGAGGT
CCAGACCCAGCAGCAATGGTGGTCGCTGCCCCGACGACGACCGGCAAGACGAAGACGAGCCGCTCCTCCATGGCGGCGCC
GCCGCCGCCGCGCCGCGGTANAGACGGCTCGGCCCAGCACTTGCAGGACGGCATCGAGAGCGCCATTGCNNNNTGCAAGC
TCTCGCTGCGCACGGCGACGGCAGAGCNGNGCTAAGGAGGAGTGCAAATGTTGAGTCGTTGATGCATGCATGAAGCATGA
TGATGTGTTCCTCGCAGTGAGATTTGATAAAGGCTTTGTTCTTGGCATAGACGAGTTGCCAAATAATCGCATTCGTTTTT
CATTAAATCCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20334.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis