Browse Element(s) Details


Os.28427.1.S2_a_at

Description gb:AK104585.1
DB_XREF= gi:32989794
TID=Os.28427.1
CNT=85
FEA=FLmRNA
TIER=FL+Stack
STK=21
UG=Os.28427 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-305-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-307-F08, full insert sequence.
FL= gb:AK105894.1 gb:AK104556.1 gb:AK106187.1 gb:AK109419.2 gb:AK109418.2 gb:AK106077.1 gb:AK106148.1 gb:AK104513.1 gb:AK119898.1 gb:AK119541.1 gb:AK104402.1 gb:AK104585.1 gb:AK104584.1 gb:AK104582.1 gb:AK109410.2 gb:AK104510.1 gb:AK104616.1 gb:AK104615.1 gb:AK105889.1 gb:AK109406.2 gb:AK104506.1 gb:AK106205.1 gb:AK106097.1 gb:AK104579.1 gb:AK104540.1 gb:AK104572.1 gb:AK104534.1 gb:AK104604.1 gb:AK104497.1 gb:AK119526.1 gb:AK106198.1 gb:AK119525.1 gb:AK104493.1 gb:AK104492.1 gb:AK104491.1 gb:AK106191.1 gb:AK104099.1 gb:AK067171.1 gb:AK103916.1 gb:AK104640.1 gb:AK104567.1 gb:AK104566.1 gb:AK104565.1 gb:AK104459.1 gb:AK106086.1 gb:AK104631.1 gb:AK119556.1 gb:AK104239.1 gb:AK106120.1 gb:AK104234.1 gb:AK119549.1 gb:AK104233.1 gb:AK104232.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1264011/11BURP domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g12600OsAffx.14664.1.S1_at11/115+7211239..7212524hypothetical protein
LOC_Os05g12610NANA5+7218180..7219734retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g12620OsAffx.11392.2.S1_x_at9/115+7222116..7226145retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g12620OsAffx.11392.3.S1_at2/115+7222116..7226145retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g12620OsAffx.11392.1.S1_at1/115+7222116..7226145retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g12620OsAffx.11392.4.S1_s_at1/115+7222116..7226145retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g12630Os.17916.1.S1_at11/115+7229295..7230696expressed protein
LOC_Os05g12630Os.28427.2.S1_x_at1/115+7229295..7230696expressed protein
LOC_Os05g12630OsAffx.26865.1.S1_x_at1/115+7229295..7230696expressed protein
LOC_Os05g12640Os.28427.2.S1_x_at11/115+7234825..7236565BURP domain containing protein, expressed
LOC_Os05g12640Os.28427.1.S2_a_at11/115+7234825..7236565BURP domain containing protein, expressed
LOC_Os05g12640Os.28427.1.S1_x_at11/115+7234825..7236565BURP domain containing protein, expressed
LOC_Os05g12640Os.49997.1.S1_at1/115+7234825..7236565BURP domain containing protein, expressed
LOC_Os05g12650Os.15412.1.S1_x_at11/115+7240951..7244299transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g12650OsAffx.26327.1.S1_at11/115+7240951..7244299transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g12650OsAffx.26327.1.S1_s_at11/115+7240951..7244299transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g12660OsAffx.4317.1.S1_at11/115+7248584..7248835hypothetical protein
LOC_Os05g12670Os.20334.1.S1_at10/115+7251019..7251893expressed protein
LOC_Os05g12670Os.50573.1.S1_at1/115+7251019..7251893expressed protein
LOC_Os05g12680Os.26382.1.S1_at11/115+7258649..7262679Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009651biological_processresponse to salt stress
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0004650molecular_functionpolygalacturonase activity
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28427.1.S2_a_at--883--6111Chr05:7235947..7235971 (25 bp)
GAGGTGGTCAACAGGGCCGGGCCGA
LOC_Os05g12640
Os.28427.1.S2_a_at--123--7711Chr05:7236074..7236098 (25 bp)
GGGTGCACGGGATCAAGGGCGCGGC
LOC_Os05g12640
Os.28427.1.S2_a_at--219--9031Chr05:7236077..7236101 (25 bp)
TGCACGGGATCAAGGGCGCGGCGTA
LOC_Os05g12640
Os.28427.1.S2_a_at--170--371Chr05:7236085..7236109 (25 bp)
ATCAAGGGCGCGGCGTACACGGTGA
LOC_Os05g12640
Os.28427.1.S2_a_at--949--3691Chr05:7236357..7236381 (25 bp)
CTATCATGTTATCATCGCGTGTGTG
LOC_Os05g12640
Os.28427.1.S2_a_at--489--10171Chr05:7236358..7236382 (25 bp)
TATCATGTTATCATCGCGTGTGTGT
LOC_Os05g12640
Os.28427.1.S2_a_at--762--411Chr05:7236359..7236383 (25 bp)
ATCATGTTATCATCGCGTGTGTGTG
LOC_Os05g12640
Os.28427.1.S2_a_at--657--9611Chr05:7236360..7236384 (25 bp)
TCATGTTATCATCGCGTGTGTGTGC
LOC_Os05g12640
Os.28427.1.S2_a_at--291--8791Chr05:7236363..7236387 (25 bp)
TGTTATCATCGCGTGTGTGTGCGCG
LOC_Os05g12640
Os.28427.1.S2_a_at--675--6791Chr05:7236364..7236388 (25 bp)
GTTATCATCGCGTGTGTGTGCGCGC
LOC_Os05g12640
Os.28427.1.S2_a_at--752--7471Chr05:7236375..7236399 (25 bp)
GTGTGTGTGCGCGCCGATCCGACAT
LOC_Os05g12640
Target Sequence 
GAGGTGGTCAACAGGGCCGGGCCGACGCCGAGGCAGGCGTACAGGGTGGAGGCCGTGAGGCCCGTGCCGGTGCCCGGGGG
CGACATGGTGGCATGCCACAGGATGCCCTACGCGTACGCCGTGTTCGGGGTGCACGGGATCAAGGGCGCGGCGTACACGG
TGACGCTGGCCGGCGCCGACGGGACCATGGCGGAGGCGGTGGCGGCGTGCCACGGGGACGTGGACGGGCACGGCGTGGCG
GTGGCGGAGGCGTACAAGAGGCTCGGCGTGGCGCCCGGGAAGGTGGCAGTCTGCCACTTCCTGCCTCAGGACGACATGCT
CTGGGTGCGCAACTGAATGAAGCAGCTACCTGCGCGCCATCCATGGCTAATTAAGCTCCTTCCTATATTTTCGATCTACC
TGCCGGCTGGCTATCATGTTATCATCGCGTGTGTGTGCGCGCCGATCCGACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28427.1.S2_a_at     

Putative homologies in rice

Putative homologies in arabidopsis