Browse Element(s) Details


OsAffx.30846.1.S1_at

Description tigr:9639.m00603
TID=OsAffx.30846.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0669011/11serine esterase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06650Os.53123.1.S1_at11/1111+3229614..3232441transcription elongation factor, putative, expressed
LOC_Os11g06650Os.52124.1.S1_at1/1111+3229614..3232441transcription elongation factor, putative, expressed
LOC_Os11g06660Os.8626.1.S1_x_at2/1111+3239913..3240191hypothetical protein
LOC_Os11g06660Os.8626.3.S1_x_at1/1111+3239913..3240191hypothetical protein
LOC_Os11g06660Os.8626.1.S1_a_at1/1111+3239913..3240191hypothetical protein
LOC_Os11g06670OsAffx.7023.1.S1_at10/1111+3241728..3245525expressed protein
LOC_Os11g06680Os.24268.1.S1_x_at11/1111+3246004..3250412expressed protein
LOC_Os11g06680Os.24268.2.S1_at7/1111+3246004..3250412expressed protein
LOC_Os11g06690OsAffx.30846.1.S1_at11/1111+3252302..3256841serine esterase family protein, expressed
LOC_Os11g06700OsAffx.30847.2.S1_at11/1111+3262032..3264110Exo70 exocyst complex subunit family protein, expressed
LOC_Os11g06700Os.13941.1.S1_x_at1/1111+3262032..3264110Exo70 exocyst complex subunit family protein, expressed
LOC_Os11g06710OsAffx.18711.1.S1_at9/1111+3265561..3266771hypothetical protein
LOC_Os11g06710OsAffx.24517.1.S1_at2/1111+3265561..3266771hypothetical protein
LOC_Os11g06720Os.12388.1.S1_at11/1111+3274354..3275323ABA/WDS induced protein, expressed
LOC_Os11g06720Os.12388.1.S1_x_at11/1111+3274354..3275323ABA/WDS induced protein, expressed
LOC_Os11g06720Os.53912.1.S1_x_at1/1111+3274354..3275323ABA/WDS induced protein, expressed
LOC_Os11g06720Os.15942.5.S1_x_at1/1111+3274354..3275323ABA/WDS induced protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30846.1.S1_at--854--8131Chr11:3255718..3255742 (25 bp)
GGACATCATCTGGATTTACGGCTTA
LOC_Os11g06690
OsAffx.30846.1.S1_at--1141--551Chr11:3255767..3255791 (25 bp)
ATCCTGGAGCTGAGTGCCTACTGTC
LOC_Os11g06690
OsAffx.30846.1.S1_at--1056--1551Chr11:3255920..3255944 (25 bp)
AGCTTAGCTTTGTTGGTCATTCCAT
LOC_Os11g06690
OsAffx.30846.1.S1_at--756--10411Chr11:3255953..3255976 (24 bp)
TTATTATCAGAAGTGCCCTAGCAGA
LOC_Os11g06690
OsAffx.30846.1.S1_at--1138--7071Chr11:3256097..3256121 (25 bp)
GTCAATATCTGGACCTCACTTAGGT
LOC_Os11g06690
OsAffx.30846.1.S1_at--463--1571Chr11:3256131..3256155 (25 bp)
AGCTCAAATTCTCTGTTCAACTCTG
LOC_Os11g06690
OsAffx.30846.1.S1_at--260--3271Chr11:3256148..3256172 (25 bp)
CAACTCTGGTCTGTGGCTTATGAAA
LOC_Os11g06690
OsAffx.30846.1.S1_at--1083--3211Chr11:3256178..3256202 (25 bp)
CAAGGGAGTCCAATGCATGCACCAG
LOC_Os11g06690
OsAffx.30846.1.S1_at--1036--1711Chr11:3256198..3256222 (25 bp)
ACCAGCTCACTTTCAGCGATGAACA
LOC_Os11g06690
OsAffx.30846.1.S1_at--968--411Chr11:3256427..3256451 (25 bp)
ATCATCTTGGTATCATCGCCACAGG
LOC_Os11g06690
OsAffx.30846.1.S1_at--993--10511Chr11:3256565..3256589 (25 bp)
TTCAGCAAGAATCGATTCCTGCCCT
LOC_Os11g06690
Target Sequence 
GGACATCATCTGGATTTACGGCTTATTAGAAACCAATGGATACTGTGTGATCCTGGAGCTGAGTGCCTACTGTCTCAGAC
AAATGAAGACAGAACATGTGGAGATTTTAAGGAAATGGGCAGAAGGCTATCAAATGAGGTAGTTGCATTCCTCAAAAGGA
AAATTGATAGGTATTCAAGAAATGGAGGCTGCAAAGATTTGAAGCTTAGCTTTGTTGGTCATTCCATTGGAAACATTATT
ATCAGAAGTGCCCTAGCAGACCCCAAGATGCAACCATTTCTGAAGAACCTCTACACATACATGTCAATATCTGGACCTCA
CTTAGGTTACTGGTACAGCTCAAATTCTCTGTTCAACTCTGGTCTGTGGCTTATGAAAAGGCTCAAGGGAGTCCAATGCA
TGCACCAGCTCACTTTCAGCGATGAACAAGATCCCCAGAACACATTTTTTTACAAGCTATGCAAGCTGAATACATTAGAT
AACTTCAAAAACATCATCTTGGTATCATCGCCACAGGATGGGTANGNTCCATATCATTCAGCAAGAATCGATTCCTGCCC
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30846.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis