Browse Element(s) Details


Os.12388.1.S1_x_at

Description gb:AF039573.1
DB_XREF= gi:2773153
GEN=Asr1
TID=Os.12388.1
CNT=281
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.12388 (NCBI UniGene Cluster)
DEF=Oryza sativa abscisic acid- and stress-inducible protein (Asr1) mRNA, complete cds.
PROD=abscisic acid- and stress-inducible protein
FL= gb:AK119547.1 gb:AK064892.1 gb:AK104677.1 gb:AK119208.1 gb:AF039573.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0672011/11ABA/WDS induced protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06680Os.24268.1.S1_x_at11/1111+3246004..3250412expressed protein
LOC_Os11g06680Os.24268.2.S1_at7/1111+3246004..3250412expressed protein
LOC_Os11g06690OsAffx.30846.1.S1_at11/1111+3252302..3256841serine esterase family protein, expressed
LOC_Os11g06700OsAffx.30847.2.S1_at11/1111+3262032..3264110Exo70 exocyst complex subunit family protein, expressed
LOC_Os11g06700Os.13941.1.S1_x_at1/1111+3262032..3264110Exo70 exocyst complex subunit family protein, expressed
LOC_Os11g06710OsAffx.18711.1.S1_at9/1111+3265561..3266771hypothetical protein
LOC_Os11g06710OsAffx.24517.1.S1_at2/1111+3265561..3266771hypothetical protein
LOC_Os11g06720Os.12388.1.S1_at11/1111+3274354..3275323ABA/WDS induced protein, expressed
LOC_Os11g06720Os.12388.1.S1_x_at11/1111+3274354..3275323ABA/WDS induced protein, expressed
LOC_Os11g06720Os.53912.1.S1_x_at1/1111+3274354..3275323ABA/WDS induced protein, expressed
LOC_Os11g06720Os.15942.5.S1_x_at1/1111+3274354..3275323ABA/WDS induced protein, expressed
LOC_Os11g06730Os.51341.1.S1_at11/1111+3284397..3284973expressed protein
LOC_Os11g06730Os.51341.1.S1_x_at11/1111+3284397..3284973expressed protein
LOC_Os11g06730OsAffx.31339.1.S1_s_at1/1111+3284397..3284973expressed protein
LOC_Os11g06740OsAffx.7024.1.S1_at10/1111+3286717..3289455SNELIPTRC, putative, expressed
LOC_Os11g06740Os.48459.1.A1_at5/1111+3286717..3289455SNELIPTRC, putative, expressed
LOC_Os11g06750Os.22696.1.S1_at11/1111+3290058..329292760S ribosomal protein L3, putative, expressed
LOC_Os11g06750Os.22696.2.S1_x_at9/1111+3290058..329292760S ribosomal protein L3, putative, expressed
LOC_Os11g06760Os.12174.1.S1_at11/1111+3293877..3299232expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12388.1.S1_x_at--937--4551Chr11:3274871..3275014 (25 bp)
GCGCCTTCGCCCTGTATGAGAAGCA
LOC_Os11g06720
Os.12388.1.S1_x_at--1097--8671Chr11:3274859..3274882 (24 bp)
TGTATGAGAAGCACGAGGCGAAGAA
LOC_Os11g06720
Os.12388.1.S1_x_at--222--2611Chr11:3274824..3274848 (25 bp)
AACGCGCACAGGCACAAGATCACGG
LOC_Os11g06720
Os.12388.1.S1_x_at--588--4111Chr11:3274820..3274844 (25 bp)
CGCACAGGCACAAGATCACGGAGGA
LOC_Os11g06720
Os.12388.1.S1_x_at--452--1471Chr11:3274733..3274757 (25 bp)
AGAAGGACCACAAGAGCGCCGAGGA
LOC_Os11g06720
Os.12388.1.S1_x_at--606--9211Chr11:3274450..3274474 (25 bp)
TCCAAATAAGTGGTGTGCATGGCTC
LOC_Os11g06720
Os.12388.1.S1_x_at--35--8691Chr11:3274437..3274461 (25 bp)
TGTGCATGGCTCTCTCCGTGTCATG
LOC_Os11g06720
Os.12388.1.S1_x_at--1126--2811Chr11:3274382..3274406 (25 bp)
AAGTGAAGCAATATTTATCGAACCT
LOC_Os11g06720
Os.12388.1.S1_x_at--1145--5371Chr11:3274378..3274402 (25 bp)
GAAGCAATATTTATCGAACCTTGAC
LOC_Os11g06720
Os.12388.1.S1_x_at--105--5191Chr11:3274375..3274399 (25 bp)
GCAATATTTATCGAACCTTGACTTT
LOC_Os11g06720
Os.12388.1.S1_x_at--214--10171Chr11:3274371..3274395 (25 bp)
TATTTATCGAACCTTGACTTTCTCC
LOC_Os11g06720
Target Sequence 
GCGCCTTCGCCCTGTATGAGAAGCACGAGGCGAAGAAGGACCCGGAGAACGCGCACAGGCACAAGATCACGGAGGAGATC
GCGGCCACGGCGGCGGTCGGCGCCNGGCGGCTACGCCTTCCACGAGCACCACGAGAAGAAGAAGGACCACAAGAGCGCCG
AGGAGTCCACCGGCGAGAAGAAGCACCACCTCTTCGGCTGANNNNNACCTCANTCACAACGTCGCCGGCGGCGGCGACGA
CCTCGCCGTACGTCGCCGGCCGCCGTGTCGTCGATTTGTGTGTGTAATAATTTGTCTTCTTCTGCATGCGTGGTGTTGCT
GTTTTTCACAAGAGTCTCCGGCCTCGACCAGTGAGAGGCTGACANGGTGGGGCCGTGAGTTCAGCTTGTGTTGCTTGATT
TTCTCTGCAGCCTTGCCCTCTGTGTGTCCAAATAAGTGGTGTGCATGGCTCTCTCCGTGTCATGTATCAATGTATTTTTA
TCTGTACTTTGTACAAGTGAAGCAATATTTATCGAACCTTGACTTTCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12388.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis