Browse Element(s) Details


Os.22696.1.S1_at

Description gb:AK073392.1
DB_XREF= gi:32983415
TID=Os.22696.1
CNT=59
FEA=FLmRNA
TIER=FL+Stack
STK=14
UG=Os.22696 (NCBI UniGene Cluster)
UG_TITLE=SS498 mRNA for ribosomal protein, partial sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033041E13, full insert sequence.
FL= gb:AK101469.1 gb:AK099225.1 gb:AK073392.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0675011/1160S ribosomal protein L3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06710OsAffx.18711.1.S1_at9/1111+3265561..3266771hypothetical protein
LOC_Os11g06710OsAffx.24517.1.S1_at2/1111+3265561..3266771hypothetical protein
LOC_Os11g06720Os.12388.1.S1_at11/1111+3274354..3275323ABA/WDS induced protein, expressed
LOC_Os11g06720Os.12388.1.S1_x_at11/1111+3274354..3275323ABA/WDS induced protein, expressed
LOC_Os11g06720Os.53912.1.S1_x_at1/1111+3274354..3275323ABA/WDS induced protein, expressed
LOC_Os11g06720Os.15942.5.S1_x_at1/1111+3274354..3275323ABA/WDS induced protein, expressed
LOC_Os11g06730Os.51341.1.S1_at11/1111+3284397..3284973expressed protein
LOC_Os11g06730Os.51341.1.S1_x_at11/1111+3284397..3284973expressed protein
LOC_Os11g06730OsAffx.31339.1.S1_s_at1/1111+3284397..3284973expressed protein
LOC_Os11g06740OsAffx.7024.1.S1_at10/1111+3286717..3289455SNELIPTRC, putative, expressed
LOC_Os11g06740Os.48459.1.A1_at5/1111+3286717..3289455SNELIPTRC, putative, expressed
LOC_Os11g06750Os.22696.1.S1_at11/1111+3290058..329292760S ribosomal protein L3, putative, expressed
LOC_Os11g06750Os.22696.2.S1_x_at9/1111+3290058..329292760S ribosomal protein L3, putative, expressed
LOC_Os11g06760Os.12174.1.S1_at11/1111+3293877..3299232expressed protein
LOC_Os11g06770OsAffx.7025.1.S1_at11/1111+3303434..3305854AP2 domain containing protein, expressed
LOC_Os11g06780Os.51809.1.S1_at10/1111+3309986..3312193Protein kinase domain containing protein, expressed
LOC_Os11g06780Os.46117.1.S1_at1/1111+3309986..3312193Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0005842cellular_componentcytosolic large ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22696.1.S1_at--81--2791Chr11:3292267..3292291 (25 bp)
AAGATCGGCAAGTCTGGCCAGGAAA
LOC_Os11g06750
Os.22696.1.S1_at--1010--5551Chr11:3292288..3292312 (25 bp)
GAAAGCCATGCTGCCTGCACTGAAT
LOC_Os11g06750
Os.22696.1.S1_at--99--5971Chr11:3292450..3292474 (25 bp)
GAGAAGGACATCACTCCCATGGGTG
LOC_Os11g06750
Os.22696.1.S1_at--229--1391Chr11:3292580..3292604 (25 bp)
AGACCTCTCGTTTGGCGCTCGAGGA
LOC_Os11g06750
Os.22696.1.S1_at--96--3751Chr11:3292693..3292717 (25 bp)
CTCAAGGCTTAGTTTGTGCGGTTCC
LOC_Os11g06750
Os.22696.1.S1_at--639--7291Chr11:3292708..3292732 (25 bp)
GTGCGGTTCCTCAGCAAAGTCAGAA
LOC_Os11g06750
Os.22696.1.S1_at--607--6431Chr11:3292744..3292768 (25 bp)
GATCATCACTACTCTATACTTGGTT
LOC_Os11g06750
Os.22696.1.S1_at--552--331Chr11:3292759..3292783 (25 bp)
ATACTTGGTTCTCTTCTCTTGATAT
LOC_Os11g06750
Os.22696.1.S1_at--208--451Chr11:3292829..3292853 (25 bp)
ATCTATGAATTTGTGCTCCCTTCTG
LOC_Os11g06750
Os.22696.1.S1_at--132--3711Chr11:3292860..3292884 (25 bp)
CTACCTTAACTCTGTTGAACCCTAT
LOC_Os11g06750
Os.22696.1.S1_at--487--10491Chr11:3292888..3292912 (25 bp)
TTAAATCTCGTAATGCGGTTTTGCT
LOC_Os11g06750
Target Sequence 
AAGATCGGCAAGTCTGGCCAGGAAAGCCATGCTGCCTGCACTGAATTTGACAGGACTGAGAAGGACATCACTCCCATGGG
TGGCTTCCCTCACTACGGTGTTGTGAAGGGCGACTACCTCATGATCAAGGGTTGCTGTGTTGGCCCCAAGAAGAGGGTCG
TCACCCTCCGCCAGTCCNCNNNGNCNNNCNNANCNAGACCTCTCGTTTGGCGCTCGAGGAGATCAAGCTCAAGTTCATCG
ACACCTCGTCCAAGTTCGGGCACGGTCGCTTCCAGACCACCGACGAGAAACAGAGGTTCTTCGGCAAGCTCAAGGCTTAG
TTTGTGCGGTTCCTCAGCAAAGTCAGAATTTGTCAAAACGATCATCACTACTCTATACTTGGTTCTCTTCTCTTGATATT
TTCTGGGGTATTAAGTTTTGTAGCAGATGTTTCAGGACCTGTTGATCTATGAATTTGTGCTCCCTTCTGCTGTCCCTACC
TTAACTCTGTTGAACCCTATGGATTAAATCTCGTAATGCGGTTTTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22696.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis