Browse Element(s) Details


OsAffx.7025.1.S1_at

Description tigr:9639.m00612
TID=OsAffx.7025.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AP2 domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0677011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06730Os.51341.1.S1_at11/1111+3284397..3284973expressed protein
LOC_Os11g06730Os.51341.1.S1_x_at11/1111+3284397..3284973expressed protein
LOC_Os11g06730OsAffx.31339.1.S1_s_at1/1111+3284397..3284973expressed protein
LOC_Os11g06740OsAffx.7024.1.S1_at10/1111+3286717..3289455SNELIPTRC, putative, expressed
LOC_Os11g06740Os.48459.1.A1_at5/1111+3286717..3289455SNELIPTRC, putative, expressed
LOC_Os11g06750Os.22696.1.S1_at11/1111+3290058..329292760S ribosomal protein L3, putative, expressed
LOC_Os11g06750Os.22696.2.S1_x_at9/1111+3290058..329292760S ribosomal protein L3, putative, expressed
LOC_Os11g06760Os.12174.1.S1_at11/1111+3293877..3299232expressed protein
LOC_Os11g06770OsAffx.7025.1.S1_at11/1111+3303434..3305854AP2 domain containing protein, expressed
LOC_Os11g06780Os.51809.1.S1_at10/1111+3309986..3312193Protein kinase domain containing protein, expressed
LOC_Os11g06780Os.46117.1.S1_at1/1111+3309986..3312193Protein kinase domain containing protein, expressed
LOC_Os11g06790Os.46500.1.S1_at5/1111+3323505..3324213transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g06800Os.46500.2.S1_at7/1111+3326426..3327298hypothetical protein
LOC_Os11g06810Os.10074.1.S1_at11/1111+3328352..3334865expressed protein
LOC_Os11g06810Os.5907.1.A1_at1/1111+3328352..3334865expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7025.1.S1_at--119--9291Chr11:3303860..3303884 (25 bp)
TCCGAGTACGCCAGGTTCTTGCAGG
LOC_Os11g06770
OsAffx.7025.1.S1_at--1086--4151Chr11:3303823..3303847 (25 bp)
CGCCGCATTTCCTCGAGCAGATAAT
LOC_Os11g06770
OsAffx.7025.1.S1_at--155--9771Chr11:3303802..3303826 (25 bp)
TAATGGAGGACTCGCCTCGGCCATC
LOC_Os11g06770
OsAffx.7025.1.S1_at--733--5011Chr11:3303744..3303768 (25 bp)
GCAGTCGTCGTTTCCGTTGTTCTAC
LOC_Os11g06770
OsAffx.7025.1.S1_at--927--6631Chr11:3303729..3303753 (25 bp)
GTTGTTCTACAGCTTCGCTGGACAT
LOC_Os11g06770
OsAffx.7025.1.S1_at--971--7631Chr11:3303577..3303601 (25 bp)
GGGACCCATCGAGATAGCGCGCGAA
LOC_Os11g06770
OsAffx.7025.1.S1_at--351--2011Chr11:3303520..3303544 (25 bp)
ACTCTCCACGTGTAGCCACTGTAGC
LOC_Os11g06770
OsAffx.7025.1.S1_at--1161--8751Chr11:3303510..3303534 (25 bp)
TGTAGCCACTGTAGCACCGCCACGT
LOC_Os11g06770
OsAffx.7025.1.S1_at--773--4171Chr11:3303493..3303517 (25 bp)
CGCCACGTCTTTTGCCAATTTAAAT
LOC_Os11g06770
OsAffx.7025.1.S1_at--282--4331Chr11:3303463..3303487 (25 bp)
GCCGGAAATTCTCTACACGTTCGTT
LOC_Os11g06770
OsAffx.7025.1.S1_at--122--9871Chr11:3303450..3303474 (25 bp)
TACACGTTCGTTGATTCATCTTGAT
LOC_Os11g06770
Target Sequence 
TCCGAGTACGCCAGGTTCTTGCAGGGCGCCGGCGAGCCGCCGCATTTCCTCGAGCAGATAATGGAGGACTCGCCTCGGCC
ATCGACGGCGGCCGGCGCGTCGTCGTCGTCGTCGGGGCAGTCGTCGTTTCCGTTGTTCTACAGCTTCGCTGGACATGAGC
TTGGCGGCAACGAAGCGAACCTTGCCCGCCCGCCGGAGAGCGGCGGCGCTGGTGGTGACGGTGGGAGGGGCTCCTCGCCG
CCGGTGACTTGGCCGGGCTATGGGTGGGGTGCGCCGCCGCCGTGGGACCCATCGAGATAGCGCGCGAACGAAGGATGGGT
TTGGAGTTTGGACTATCTCCACTCTCCACGTGTAGCCACTGTAGCACCGCCACGTCTTTTGCCAATTTAAATTTCCCGCC
GGAAATTCTCTACACGTTCGTTGATTCATCTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7025.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis