Browse Element(s) Details


Os.5907.1.A1_at

Description gb:CB676436
DB_XREF= gi:29680161
DB_XREF=OSJNEe12L04.r
CLONE=OSJNEe12L04
TID=Os.5907.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.5907 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T51842 (A.thaliana) T51842 RING-H2 finger protein RHA2a (imported) - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g068101/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06770OsAffx.7025.1.S1_at11/1111+3303434..3305854AP2 domain containing protein, expressed
LOC_Os11g06780Os.51809.1.S1_at10/1111+3309986..3312193Protein kinase domain containing protein, expressed
LOC_Os11g06780Os.46117.1.S1_at1/1111+3309986..3312193Protein kinase domain containing protein, expressed
LOC_Os11g06790Os.46500.1.S1_at5/1111+3323505..3324213transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g06800Os.46500.2.S1_at7/1111+3326426..3327298hypothetical protein
LOC_Os11g06810Os.10074.1.S1_at11/1111+3328352..3334865expressed protein
LOC_Os11g06810Os.5907.1.A1_at1/1111+3328352..3334865expressed protein
LOC_Os11g06820OsAffx.7026.1.S1_x_at11/1111+3338876..3340595AUX1-like permease; 10674-8589, putative, expressed
LOC_Os11g06820OsAffx.7026.1.S1_at11/1111+3338876..3340595AUX1-like permease; 10674-8589, putative, expressed
LOC_Os11g06830OsAffx.28175.1.S1_s_at11/1111+3348224..3348672hypothetical protein
LOC_Os11g06830OsAffx.28175.1.S1_x_at1/1111+3348224..3348672hypothetical protein
LOC_Os11g06840Os.57118.1.S1_at11/1111+3353344..3355631Zinc finger, C2H2 type family protein, expressed
LOC_Os11g06850OsAffx.7027.1.S1_at11/1111+3359042..3360008hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5907.1.A1_at--964--6751Chr07:29150447..29150471 (25 bp)
GTTAATTCGGCGTAGTTCTAGCTTC
NONE
Os.5907.1.A1_at--686--6731Chr07:29150433..29150457 (25 bp)
GTTCTAGCTTCAATTTCATCTCTTA
NONE
Os.5907.1.A1_at--737--1571Chr07:29150403..29150427 (25 bp)
AGCTGAACCTCAACCAAATAATTTT
NONE
Os.5907.1.A1_at--877--4851Chr07:29150323..29150346 (24 bp)
GCTAGCACGACTAATATATCCTTCA
NONE
Os.5907.1.A1_at--758--251Chr02:22036716..22037031 (25 bp)
ATATCCTTCATAAAGTACTCCCTCC
NONE
Os.5907.1.A1_at--858--5632Chr11:3333693..3334193 (25 bp)
GACACGGATTTCATCGGAGTCCAAT
LOC_Os11g06810
Os.5907.1.A1_at--831--491NONE
ATCGGAGTCCAATTAATGTAGCATA
NONE
Os.5907.1.A1_at--391--7471NONE
GTGTGTATATTGTGCATGACGTATT
NONE
Os.5907.1.A1_at--400--10351NONE
TTTTAGTGCCCAAACATTATATGTG
NONE
Os.5907.1.A1_at--185--6771NONE
GTTAGAGTCGTATCAAATGAACCCA
NONE
Os.5907.1.A1_at--422--2051NONE
ACTTATTTTGGTGCATAGGGTCCAA
NONE
Target Sequence 
GTTAATTCGGCGTAGTTCTAGCTTCAATTTCATCTCTTATATAGAGCTGAACCTCAACCAAATAATTTTAGCTTCACTTA
AAAAGGAAGTAAAGTGGAGCTGATTATAGTGCTCTCACAAAATAAGCTAGCACGACTAATATATCCTTCATAAAGTACTC
CCTCCTTACCAAATTGATCATTATATAATTTTTTAAATTGATTAGTGTCATATAATGGCGTGGACACGGATTTCATCGGA
GTCCAATTAATGTAGCATAGGAGAATGTAGTGCATGCTAAGGATATAATTATGAATTGTGTTTTAATCGATGCATGCATT
ATGAGATAATGTGTGTATATTGTGCATGACGTATTAAATTGTTAATCGATGCGGTTTAAATAACTTTTTTTTTTAGTGCC
CAAACATTATATGTGTGATTATCAATTTGGGATGGAGGGAGTAGAATTTAGGAGTTAGAGTCGTATCAAATGAACCCAAA
ACTTATTTTGGTGCATAGGGTCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5907.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis