Browse Element(s) Details

OsAffx.28175.1.S1_x_at

Description

tigr:9634.m04744
TID=OsAffx.28175.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g48740	10/11	hypothetical protein
LOC_Os03g52210	4/11	retrotransposon protein, putative, unclassified, expressed
LOC_Os11g06830	1/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g48720	Os.54979.1.S1_at	11/11	6	+	29476951..29479907	Cadmium/zinc-transporting ATPase 4, putative, expressed
LOC_Os06g48730	NA	NA	6	+	29496452..29497009	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g48740	OsAffx.28175.1.S1_s_at	11/11	6	+	29500753..29501837	hypothetical protein
LOC_Os06g48740	OsAffx.28175.1.S1_at	10/11	6	+	29500753..29501837	hypothetical protein
LOC_Os06g48740	OsAffx.28175.1.S1_x_at	10/11	6	+	29500753..29501837	hypothetical protein
LOC_Os06g48750	Os.39027.1.S1_s_at	11/11	6	+	29502776..29506317	Eukaryotic initiation factor 4A, putative, expressed
LOC_Os06g48750	Os.139.1.S1_at	11/11	6	+	29502776..29506317	Eukaryotic initiation factor 4A, putative, expressed
LOC_Os06g48750	Os.39027.1.S1_at	4/11	6	+	29502776..29506317	Eukaryotic initiation factor 4A, putative, expressed
LOC_Os06g48760	Os.26461.1.S1_at	11/11	6	+	29507826..29514167	UDP-sugar pyrophospharylase, putative, expressed
LOC_Os06g48770	Os.11281.1.S2_at	11/11	6	+	29515245..29522984	beta-lactamase family protein, expressed
LOC_Os06g48770	Os.11281.1.S1_at	10/11	6	+	29515245..29522984	beta-lactamase family protein, expressed
LOC_Os06g48770	Os.11281.1.S3_at	10/11	6	+	29515245..29522984	beta-lactamase family protein, expressed
LOC_Os06g48780	Os.12291.1.S1_at	11/11	6	+	29526365..29527955	60S acidic ribosomal protein P3, putative, expressed
LOC_Os06g48780	OsAffx.28176.1.S1_at	9/11	6	+	29526365..29527955	60S acidic ribosomal protein P3, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.28175.1.S1_x_at--327--353	1	NONE	CATCGACAAGGAAGAACCCAACATT	NONE
OsAffx.28175.1.S1_x_at--1139--273	1	Chr06:29501054..29501077 (24 bp)	AAGAACCCAACATTAGGATAATGGG	LOC_Os06g48740
OsAffx.28175.1.S1_x_at--945--645	1	Chr06:29501069..29501093 (25 bp)	GATAATGGGTGATGCTCCGGTGCAC	LOC_Os06g48740
OsAffx.28175.1.S1_x_at--1118--975	2	Chr06:29501071..29501095 (25 bp)	TAATGGGTGATGCTCCGGTGCACTC	LOC_Os06g48740
OsAffx.28175.1.S1_x_at--578--81	2	Chr06:29501073..29501097 (25 bp)	ATGGGTGATGCTCCGGTGCACTCTA	LOC_Os06g48740
OsAffx.28175.1.S1_x_at--832--777	3	Chr06:29501087..29501111 (25 bp)	GGTGCACTCTACTTGCAGTATTCTA	LOC_Os06g48740
OsAffx.28175.1.S1_x_at--1160--379	1	Chr06:29501142..29501559 (25 bp)	TTAAAAGGGCAGTGTCGGAGGAATC	LOC_Os06g48740
OsAffx.28175.1.S1_x_at--141--503	1	Chr06:29501545..29501567 (23 bp)	GCAGTGTCGGAGGAATCAGCCATTA	LOC_Os06g48740
OsAffx.28175.1.S1_x_at--386--821	3	Chr06:29501554..29501578 (25 bp)	GGAATCAGCCATTAGTTTTCCACTG	LOC_Os06g48740
OsAffx.28175.1.S1_x_at--919--461	1	Chr06:29501591..29501615 (25 bp)	GCGAGCTGCTCAGGATCGGATGCCA	LOC_Os06g48740
OsAffx.28175.1.S1_x_at--160--841	3	Chr09:21574486..21574506 (21 bp)	GGCCGAGGTAGGTCTCCACGCTGTT	NONE

Target Sequence

CATCGACAAGGAAGAACCCAACATTAGGATAATGGGTGATGCTCCGGTGCACTCTACTTGCAGTATTCTACTACAAGTAG
AATTAATCTCGACCGTTTATTTAAAAGGGCAGTGTCGGAGGAATCAGCCATTAGTTTTCCACTGTGTCGGAGAATGGCGA
GCTGCTCAGGATCGGATGCCACGGCCGGCCGAGGTAGGTCTCCACGCTGTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis