Browse Element(s) Details

Os.11281.1.S3_at

Description

gb:AK065611.1
DB_XREF= gi:32975629
TID=Os.11281.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11281 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013029I23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013029I23, full insert sequence.
FL= gb:AK120169.1 gb:AK065611.1 gb:AK122000.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g48770	10/11	beta-lactamase family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g48730	NA	NA	6	+	29496452..29497009	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g48740	OsAffx.28175.1.S1_s_at	11/11	6	+	29500753..29501837	hypothetical protein
LOC_Os06g48740	OsAffx.28175.1.S1_at	10/11	6	+	29500753..29501837	hypothetical protein
LOC_Os06g48740	OsAffx.28175.1.S1_x_at	10/11	6	+	29500753..29501837	hypothetical protein
LOC_Os06g48750	Os.39027.1.S1_s_at	11/11	6	+	29502776..29506317	Eukaryotic initiation factor 4A, putative, expressed
LOC_Os06g48750	Os.139.1.S1_at	11/11	6	+	29502776..29506317	Eukaryotic initiation factor 4A, putative, expressed
LOC_Os06g48750	Os.39027.1.S1_at	4/11	6	+	29502776..29506317	Eukaryotic initiation factor 4A, putative, expressed
LOC_Os06g48760	Os.26461.1.S1_at	11/11	6	+	29507826..29514167	UDP-sugar pyrophospharylase, putative, expressed
LOC_Os06g48770	Os.11281.1.S2_at	11/11	6	+	29515245..29522984	beta-lactamase family protein, expressed
LOC_Os06g48770	Os.11281.1.S1_at	10/11	6	+	29515245..29522984	beta-lactamase family protein, expressed
LOC_Os06g48770	Os.11281.1.S3_at	10/11	6	+	29515245..29522984	beta-lactamase family protein, expressed
LOC_Os06g48780	Os.12291.1.S1_at	11/11	6	+	29526365..29527955	60S acidic ribosomal protein P3, putative, expressed
LOC_Os06g48780	OsAffx.28176.1.S1_at	9/11	6	+	29526365..29527955	60S acidic ribosomal protein P3, putative, expressed
LOC_Os06g48790	OsAffx.5148.1.S1_x_at	11/11	6	+	29529047..29532722	hypothetical protein
LOC_Os06g48790	OsAffx.19937.1.S1_at	1/11	6	+	29529047..29532722	hypothetical protein
LOC_Os06g48800	Os.57530.1.S1_at	11/11	6	+	29533236..29535555	Cation transport protein, expressed
LOC_Os06g48800	Os.57530.1.S1_x_at	11/11	6	+	29533236..29535555	Cation transport protein, expressed
LOC_Os06g48800	Os.19896.2.S1_x_at	8/11	6	+	29533236..29535555	Cation transport protein, expressed
LOC_Os06g48810	Os.2617.2.S1_a_at	11/11	6	+	29537942..29540221	high-affinity sodium transporter, putative, expressed
LOC_Os06g48820	NA	NA	6	+	29546213..29546692	retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification

GO id	Type	Name
GO:0006810	biological_process	transport
GO:0005215	molecular_function	transporter activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.11281.1.S3_at--740--423	1	Chr06:29515718..29515742 (25 bp)	CCGTGACGGTGAACAAGATGTCGCT	LOC_Os06g48770
Os.11281.1.S3_at--165--223	1	Chr06:29515610..29515634 (25 bp)	ACAAGGGCCCCGACATGGTGCTCAA	LOC_Os06g48770
Os.11281.1.S3_at--943--803	1	Chr06:29515573..29515597 (25 bp)	GGAGTAGCACCAACCTGCCAGGCCA	LOC_Os06g48770
Os.11281.1.S3_at--826--87	1	Chr06:29515554..29515578 (25 bp)	AGGCCACTACTACTGACATTTCATC	LOC_Os06g48770
Os.11281.1.S3_at--446--877	1	Chr06:29515450..29515474 (25 bp)	TGTTCTTTCCGGGTATACGTATTAG	LOC_Os06g48770
Os.11281.1.S3_at--281--59	1	Chr06:29515403..29515427 (25 bp)	ATGCCATTTGGATGTGGCTTCGTCA	LOC_Os06g48770
Os.11281.1.S3_at--1082--751	1	Chr06:29515390..29515414 (25 bp)	GTGGCTTCGTCATATATACTCCAAA	LOC_Os06g48770
Os.11281.1.S3_at--64--1029	1	Chr06:29515334..29515358 (25 bp)	TTTCCTGTTTACATTTGCAACTGTG	LOC_Os06g48770
Os.11281.1.S3_at--431--739	1	Chr06:29515312..29515336 (25 bp)	GTGAGGTGCCAAGTGATGCCATGTT	LOC_Os06g48770
Os.11281.1.S3_at--458--1075	1	Chr06:29515257..29515281 (25 bp)	TTGAGATTCCAGATTAGAACCCGTG	LOC_Os06g48770
Os.11281.1.S3_at--23--15	1	Chr06:29515244..29515269 (25 bp)	ATTAGAACCCGTGATCTGCGACAGA	NONE

Target Sequence

CCGTGACGGTGAACAAGATGTCGCTGGNCGGCGTGACGCGGCGCGTGGTCCGGCTGGTGTGCGAGGAGCTGGGCGTGCCG
GTGCCCGACGAGTTCTCCGTCGCCGGCGACAAGGGCCCCGACATGGTGCTCAACCTCGCGCCGCCGGAGTAGCACCAACC
TGCCAGGCCACTACTACTGACATTTCATCATACACTTTGATACATATACACATGTAGCTAGGTAAGAGTAAACTCATGAT
GATATAACAAAATGAGGGGAAAAATTAATGTTCTTTCCGGGTATACGTATTAGTACAATATAGTAGTACAAATTTATGCC
ATTTGGATGTGGCTTCGTCATATATACTCCAAATTATACATGTATACAAGATTTTTGTTTCATTTTTCCTGTTTACATTT
GCAACTGTGAGGTGCCAAGTGATGCCATGTTGGAAAATTCGAANANNNNGTTGTAAATGATTTGAGATTCCAGATTAGAA
CCCGTGATCTGCGACAGA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis