Browse Element(s) Details

Os.2617.2.S1_a_at

Description

gb:AB061313.1
DB_XREF= gi:14588584
GEN=HKT2
TID=Os.2617.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2617 (NCBI UniGene Cluster)
DEF=Oryza sativa (indica cultivar-group) HKT2 mRNA for potassium-sodium symporter, complete cds, cultivar:Pokkali.
PROD=potassium-sodium symporter
FL= gb:AB061313.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g48810	11/11	high-affinity sodium transporter, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g48760	Os.26461.1.S1_at	11/11	6	+	29507826..29514167	UDP-sugar pyrophospharylase, putative, expressed
LOC_Os06g48770	Os.11281.1.S2_at	11/11	6	+	29515245..29522984	beta-lactamase family protein, expressed
LOC_Os06g48770	Os.11281.1.S1_at	10/11	6	+	29515245..29522984	beta-lactamase family protein, expressed
LOC_Os06g48770	Os.11281.1.S3_at	10/11	6	+	29515245..29522984	beta-lactamase family protein, expressed
LOC_Os06g48780	Os.12291.1.S1_at	11/11	6	+	29526365..29527955	60S acidic ribosomal protein P3, putative, expressed
LOC_Os06g48780	OsAffx.28176.1.S1_at	9/11	6	+	29526365..29527955	60S acidic ribosomal protein P3, putative, expressed
LOC_Os06g48790	OsAffx.5148.1.S1_x_at	11/11	6	+	29529047..29532722	hypothetical protein
LOC_Os06g48790	OsAffx.19937.1.S1_at	1/11	6	+	29529047..29532722	hypothetical protein
LOC_Os06g48800	Os.57530.1.S1_at	11/11	6	+	29533236..29535555	Cation transport protein, expressed
LOC_Os06g48800	Os.57530.1.S1_x_at	11/11	6	+	29533236..29535555	Cation transport protein, expressed
LOC_Os06g48800	Os.19896.2.S1_x_at	8/11	6	+	29533236..29535555	Cation transport protein, expressed
LOC_Os06g48810	Os.2617.2.S1_a_at	11/11	6	+	29537942..29540221	high-affinity sodium transporter, putative, expressed
LOC_Os06g48820	NA	NA	6	+	29546213..29546692	retrotransposon protein, putative, LINE subclass
LOC_Os06g48830	OsAffx.28177.1.S1_at	10/11	6	+	29553260..29554030	hypothetical protein
LOC_Os06g48839	NA	NA	6	+	29557416..29558207	NA

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Gene Ontology Classification

GO id	Type	Name
GO:0006814	biological_process	sodium ion transport
GO:0015081	molecular_function	sodium ion transporter activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.2617.2.S1_a_at--1151--427	1	Chr06:29539007..29539031 (25 bp)	CCTGCTGTTCTAGTACTGTTCATCA	LOC_Os06g48810
Os.2617.2.S1_a_at--629--975	1	Chr06:29538866..29538886 (21 bp)	TAATGTACTTACCACCATCGACAAC	LOC_Os06g48810
Os.2617.2.S1_a_at--1067--561	1	Chr06:29538847..29538871 (25 bp)	GACAACATTTGCACTGTCCAATGGA	LOC_Os06g48810
Os.2617.2.S1_a_at--809--803	1	Chr06:29538704..29538728 (25 bp)	GGAGTCGTCTCAGAAATGATCCACT	LOC_Os06g48810
Os.2617.2.S1_a_at--162--559	1	Chr06:29538692..29538716 (25 bp)	GAAATGATCCACTCAACTTCTCTGC	LOC_Os06g48810
Os.2617.2.S1_a_at--198--327	1	Chr06:29538679..29538703 (25 bp)	CAACTTCTCTGCTCTGAACATGATA	LOC_Os06g48810
Os.2617.2.S1_a_at--615--195	2	Chr06:29555424..29555448 (25 bp)	ACTGGTTACAGCTGTTCGAGGTTGC	NONE
Os.2617.2.S1_a_at--824--807	2	Chr06:29538283..29538307 (25 bp)	GGAGCATCTGCCAGGACAAGCCGTA	LOC_Os06g48810
Os.2617.2.S1_a_at--1093--265	1	Chr06:29538266..29538290 (25 bp)	AAGCCGTACAGCTTGTCCGGATGGT	LOC_Os06g48810
Os.2617.2.S1_a_at--941--631	2	Chr06:29555337..29555361 (25 bp)	GATGAAGGAAAGTTGCTGCTAGTCT	NONE
Os.2617.2.S1_a_at--41--635	2	Chr06:29555308..29555332 (25 bp)	GATGCTCTATGGAAGGCTCAAGGCC	NONE

Target Sequence

CCTGCTGTTCTAGTACTGTTCATCATCTTAATGTACTTACCACCATCGACAACATTTGCACTGTCCAATGGAGATGAAAA
AACTGCAAATAAGAAAGCGAAAAGAAAATTAGGTTTAGTGGTGCGGAACCTGGCATTTTCACAGCTTGCCTGCAACGCGG
TCTTTGTGATAGTTGCGCTCATCACTGAGAGGAGTCGTCTCAGAAATGATCCACTCAACTTCTCTGCTCTGAACATGATA
TTTGAAGTCATCAGTGCATATGGGAATGTAGGACTAACCACTGGTTACAGCTGTTCGAGGTTGCAAAAACTGCACCCGGG
GAGCATCTGCCAGGACAAGCCGTACAGCTTGTCCGGATGGTGGAGCGATGAAGGAAAGTTGCTGCTAGTCTCTGTGATGC
TCTATGGAAGGCTCAAGGCC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis