Browse Element(s) Details


Os.19896.2.S1_x_at

Description gb:CB623166
DB_XREF= gi:29618154
DB_XREF=OSIIEa10L09.r
CLONE=OSIIEa10L09
TID=Os.19896.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.19896 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative high-affinity potassium uptake transporter (OJ1619_F12.10), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3485011/11Cation transport protein, expressed
LOC_Os06g488008/11Cation transport protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34810NANA1+19544645..19547536retrotransposon protein, putative, unclassified
LOC_Os01g34820NANA1+19548164..19551455retrotransposon protein, putative, unclassified
LOC_Os01g34830OsAffx.23514.4.S1_at10/111+19556334..19559767hypothetical protein
LOC_Os01g34840NANA1+19563216..19566835retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g34850Os.19896.2.S1_x_at11/111+19568889..19570698Cation transport protein, expressed
LOC_Os01g34850Os.57530.1.S1_x_at6/111+19568889..19570698Cation transport protein, expressed
LOC_Os01g34860Os.53856.1.S1_at11/111+19572000..19575033expressed protein
LOC_Os01g34860OsAffx.5148.1.S1_x_at4/111+19572000..19575033expressed protein
LOC_Os01g34870Os.37127.1.A1_at10/111+19579739..19584249Barren protein, expressed
LOC_Os01g34880OsAffx.21286.1.S1_at9/111+19585422..19587686glycosyl transferase family 48 protein, putative, expressed
LOC_Os01g34890OsAffx.21285.2.S1_at11/111+19591311..19607305glycosyl transferase family 48 protein, putative
LOC_Os01g34890Os.20183.1.S1_at1/111+19591311..19607305glycosyl transferase family 48 protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0006814biological_processsodium ion transport
GO:0015081molecular_functionsodium ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19896.2.S1_x_at--211--92Chr01:19569952..19569976 (25 bp)
ATTCCATTGATTGTTCCCTTGTTGC
LOC_Os01g34850
Os.19896.2.S1_x_at--802--4552Chr01:19569975..19569999 (25 bp)
GCGCCAGCGGCTTTAGTACTATTCA
LOC_Os01g34850
Os.19896.2.S1_x_at--905--8732Chr01:19570093..19570116 (24 bp)
TGTACACTCCATCCTTGACAAAGTT
LOC_Os01g34850
Os.19896.2.S1_x_at--673--2192Chr01:19570109..19570133 (25 bp)
ACAAAGTTGTTCTCAGCATGTCAAG
LOC_Os01g34850
Os.19896.2.S1_x_at--244--6472Chr01:19570234..19570258 (25 bp)
GATAATGCTGGTCTGCATCACTGAA
LOC_Os01g34850
Os.19896.2.S1_x_at--119--7752Chr01:19570315..19570440 (25 bp)
GGTGATAAGTGCCTACGGGAACATT
LOC_Os01g34850
Os.19896.2.S1_x_at--335--2512Chr01:19570435..19570459 (25 bp)
AACATTGGGTTGTCCACTGGCTACA
LOC_Os01g34850
Os.19896.2.S1_x_at--391--3471Chr01:19570541..19570565 (25 bp)
CAGGGAAACTGATTCTTGTTCTTGC
LOC_Os01g34850
Os.19896.2.S1_x_at--583--631Chr01:19570567..19570591 (25 bp)
ATGCTCTGCGGGAGGCTCAACTCAA
LOC_Os01g34850
Os.19896.2.S1_x_at--17--1012Chr01:19570592..19570616 (25 bp)
AGGATTCCACAAGCGCACGAACTAG
LOC_Os01g34850
Os.19896.2.S1_x_at--496--4631Chr01:19570644..19570668 (25 bp)
GCGATCGATGTTCTGCAAGAATCAA
LOC_Os01g34850
Target Sequence 
ATTCCATTGATTGTTCCCTTGTTGCGCCAGCGGCTTTAGTACTATTCATGGTCATGATGTACACTCCATCCTTGACAAAG
TTGTTCTCAGCATGTCAAGATCACAAACGAATCGGCCNAGAAAGCGACGATAGAACAAGCAAGGGGAAACCATTCCTGAA
GATGATGGCATTTTCACCNCTCGGCTTCAACACCACAGTGATAATGCTGGTCTGCATCACTGAAAGGAGATCACTCTCCA
CTGACCCTCTCAATTTNTCCACATTTAACATCATCTTTGAGGTGATAAGTGCCTACGGGAACATTGGGTTGTCCACTGGC
TACAGCTGCTCGAGGCAGCTGCAGCACCAGGAGGGGATTGCCTGCCATGAGAAGGCGTACAACTTCTCGGGGTGGTGGAG
TGAACCAGGGAAACTGATTCTTGTTCTTGCNATGCTCTGCGGGAGGCTCAACTCAAAGGATTCCACAAGCGCACGAACTA
GGTGATGATGATCAGAAGCGATCANTNTGCGATCGATGTTCTGCAAGAATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19896.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis