Browse Element(s) Details


Os.20183.1.S1_at

Description gb:AU175102
DB_XREF= gi:13421012
DB_XREF=AU175102
CLONE=E4286
TID=Os.20183.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.20183 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g348901/11glycosyl transferase family 48 protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34840NANA1+19563216..19566835retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g34850Os.19896.2.S1_x_at11/111+19568889..19570698Cation transport protein, expressed
LOC_Os01g34850Os.57530.1.S1_x_at6/111+19568889..19570698Cation transport protein, expressed
LOC_Os01g34860Os.53856.1.S1_at11/111+19572000..19575033expressed protein
LOC_Os01g34860OsAffx.5148.1.S1_x_at4/111+19572000..19575033expressed protein
LOC_Os01g34870Os.37127.1.A1_at10/111+19579739..19584249Barren protein, expressed
LOC_Os01g34880OsAffx.21286.1.S1_at9/111+19585422..19587686glycosyl transferase family 48 protein, putative, expressed
LOC_Os01g34890OsAffx.21285.2.S1_at11/111+19591311..19607305glycosyl transferase family 48 protein, putative
LOC_Os01g34890Os.20183.1.S1_at1/111+19591311..19607305glycosyl transferase family 48 protein, putative
LOC_Os01g34900OsAffx.27867.1.S1_s_at2/111+19608274..19609113glycosyl transferase family 48 protein, putative, expressed
LOC_Os01g34910NANA1+19611808..19613796hypothetical protein
LOC_Os01g34920Os.41043.1.S1_at10/111+19622416..19628985Beta-galactosidase precursor, putative, expressed
LOC_Os01g34930Os.20616.2.S1_x_at11/111+19630240..19632883glycosyl transferase family 48 protein, putative, expressed
LOC_Os01g34930Os.20616.2.S1_at11/111+19630240..19632883glycosyl transferase family 48 protein, putative, expressed
LOC_Os01g34930Os.20616.1.S1_at10/111+19630240..19632883glycosyl transferase family 48 protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006075biological_processbeta-1,3 glucan biosynthesis
GO:0009556biological_processmicrosporogenesis
GO:0009620biological_processresponse to fungi
GO:0009860biological_processpollen tube growth
GO:0009863biological_processsalicylic acid mediated signaling pathway
GO:0009870biological_processdefense response signaling pathway, resistance gene-dependent
GO:0009965biological_processleaf morphogenesis
GO:0010208biological_processpollen wall formation
GO:0000148cellular_component1,3-beta-glucan synthase complex
GO:0009504cellular_componentcell plate
GO:0003843molecular_function1,3-beta-glucan synthase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20183.1.S1_at--219--7158Chr12:25622497..25622521 (25 bp)
GTCTCACCGGGATTTATTCCCAAAT
NONE
Os.20183.1.S1_at--565--3295Chr12:25622517..25622541 (25 bp)
CAAATAAATTTCCAGCTCTCCCGTG
NONE
Os.20183.1.S1_at--454--9836Chr12:25622521..25622545 (25 bp)
TAAATTTCCAGCTCTCCCGTGCCAG
NONE
Os.20183.1.S1_at--126--4255Chr12:25622537..25622561 (25 bp)
CCGTGCCAGCGCCACAATAGTAGAG
NONE
Os.20183.1.S1_at--988--7274Chr12:25622539..25622563 (25 bp)
GTGCCAGCGCCACAATAGTAGAGTG
NONE
Os.20183.1.S1_at--557--2234Chr12:25622550..25622574 (25 bp)
ACAATAGTAGAGTGACGTCCTCGTC
NONE
Os.20183.1.S1_at--289--3115Chr12:25622552..25622576 (25 bp)
AATAGTAGAGTGACGTCCTCGTCAC
NONE
Os.20183.1.S1_at--1011--46510Chr12:25622649..25622673 (25 bp)
GCGTGGTGGAGTGCGTTTGCACGTA
NONE
Os.20183.1.S1_at--610--3738Chr12:25622684..25622708 (25 bp)
CTACAGCTTGTACTCAAAGTGGAGA
NONE
Os.20183.1.S1_at--520--4937Chr12:25622689..25622713 (25 bp)
GCTTGTACTCAAAGTGGAGAGCTCT
NONE
Os.20183.1.S1_at--581--3731Chr11:7884668..7884692 (25 bp)
CTAAAGATTCTCTTAGAGAGAGTAT
NONE
Target Sequence 
GTCTCACCGGGATTTATTCCCAAATAAATTTCCAGCTCTCCCGTGCCAGCGCCACAATAGTAGAGTGACGTCCTCGTCAC
NCACAAGGTNCTTAGGTGGCTTTGTGTATCTCATTAGNACGTGTGTGTATAGTTGATAGGTNNNGNNNGNNNNNAGNNNN
NNNNNTGTGTGTGCGTGGTGGAGTGCGTTTGCACGTANTGTTCAGATACTACAGCTTGTACTCAAAGTGGAGAGCTCTCA
AAAAAAAAAAANCTAAAGATTCTCTTAGAGAGAGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20183.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis