Browse Element(s) Details


Os.20616.1.S1_at

Description gb:AK064446.1
DB_XREF= gi:32974464
TID=Os.20616.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.20616 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1029_F04.4 (OJ1029_F04.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-110-F01, full insert sequence.
FL= gb:AK064446.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3493010/11glycosyl transferase family 48 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34890OsAffx.21285.2.S1_at11/111+19591311..19607305glycosyl transferase family 48 protein, putative
LOC_Os01g34890Os.20183.1.S1_at1/111+19591311..19607305glycosyl transferase family 48 protein, putative
LOC_Os01g34900OsAffx.27867.1.S1_s_at2/111+19608274..19609113glycosyl transferase family 48 protein, putative, expressed
LOC_Os01g34910NANA1+19611808..19613796hypothetical protein
LOC_Os01g34920Os.41043.1.S1_at10/111+19622416..19628985Beta-galactosidase precursor, putative, expressed
LOC_Os01g34930Os.20616.2.S1_x_at11/111+19630240..19632883glycosyl transferase family 48 protein, putative, expressed
LOC_Os01g34930Os.20616.2.S1_at11/111+19630240..19632883glycosyl transferase family 48 protein, putative, expressed
LOC_Os01g34930Os.20616.1.S1_at10/111+19630240..19632883glycosyl transferase family 48 protein, putative, expressed
LOC_Os01g34940OsAffx.21282.1.S1_at7/111+19651660..19652316hypothetical protein
LOC_Os01g34940OsAffx.7080.1.S1_x_at1/111+19651660..19652316hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006075biological_processbeta-1,3 glucan biosynthesis
GO:0009556biological_processmicrosporogenesis
GO:0009860biological_processpollen tube growth
GO:0010208biological_processpollen wall formation
GO:0000148cellular_component1,3-beta-glucan synthase complex
GO:0009504cellular_componentcell plate
GO:0003843molecular_function1,3-beta-glucan synthase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20616.1.S1_at--673--4271Chr01:19630737..19630761 (25 bp)
CCTGTTCTGTTCATGTTGCACCGGG
LOC_Os01g34930
Os.20616.1.S1_at--1020--4031Chr01:19630694..19630718 (25 bp)
CGTTGCTGCGCCAGGTTTAGGCTGA
LOC_Os01g34930
Os.20616.1.S1_at--575--3111Chr01:19630428..19630452 (25 bp)
AATATATGGGTTGTGCTTCTCTGCA
LOC_Os01g34930
Os.20616.1.S1_at--420--4911Chr01:19630414..19630438 (25 bp)
GCTTCTCTGCAGGTTTGACTAGTAC
LOC_Os01g34930
Os.20616.1.S1_at--387--1011Chr01:19630404..19630428 (25 bp)
AGGTTTGACTAGTACAATCCGATGT
LOC_Os01g34930
Os.20616.1.S1_at--827--3031Chr01:19630389..19630413 (25 bp)
AATCCGATGTAACTTTTCCTGGCAC
LOC_Os01g34930
Os.20616.1.S1_at--933--8731Chr01:19630382..19630406 (25 bp)
TGTAACTTTTCCTGGCACCGATATG
LOC_Os01g34930
Os.20616.1.S1_at--332--10611Chr01:19630336..19630360 (25 bp)
TTCTGGTTCCATCGTGTTCATATGA
LOC_Os01g34930
Os.20616.1.S1_at--141--5011Chr01:19630309..19630333 (25 bp)
GCATGTGTGTAGTAGCCCCTATTGT
LOC_Os01g34930
Os.20616.1.S1_at--443--4531Chr01:19630295..19630319 (25 bp)
GCCCCTATTGTTTTATTGCTTGGTT
LOC_Os01g34930
Os.20616.1.S1_at--394--191NONE
ATTTCATTTTCAGAGCCCAGTTGCT
NONE
Target Sequence 
CCTGTTCTGTTCATGTTGCACCGGGGGCACCNCATGCAAGGGGCGTTGCTGCGCCAGGTTTAGGCTGAGGAGCCGGGATG
TGCTCCGCAAGATCGGGCCATGGGACTCCATCCAGGAGATGGCGAGGATGTACGAGTACACCATGGGGATCCTCATCTTC
TTCCCCATCGCCGTCCNTGTCGTGGNTTCCCCTTCNTNTCCGAGTTNCAGACTCGGCTGCTCTTCANCCANGCCTTCANC
CGGGGGCTNGCAGATCTCCAGGATCCTCNCCGNCCAGAATGGTAGCGGCTCAAAGAGGGACTGATCATGATGAATATATG
GGTTGTGCTTCTCTGCAGGTTTGACTAGTACAATCCGATGTAACTTTTCCTGGCACCGATATGNCGGTTCTGGGATTNAT
TTGTTTCTGGTTCCATCGTGTTCATATGAGGGCATGTGTGTAGTAGCCCCTATTGTTTTATTGCTTGGTTNCAGTGTTTG
GGGAACAAAAAANCAATGAGAATGNCGACCAGGATTTTCTATANCAAGGAATTTCATTTTCAGAGCCCAGTTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20616.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis