Browse Element(s) Details


OsAffx.7080.1.S1_x_at

Description tigr:9639.m01105
TID=OsAffx.7080.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=GAI
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1160011/11hypothetical protein
LOC_Os11g478702/11GRAS family transcription factor containing protein, expressed
LOC_Os11g478902/11GRAS family transcription factor containing protein, expressed
LOC_Os10g253491/11hypothetical protein
LOC_Os07g371501/11expressed protein
LOC_Os07g319501/11hypothetical protein
LOC_Os11g262201/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g349401/11hypothetical protein
LOC_Os08g065001/11pentatricopeptide, putative, expressed
LOC_Os05g399701/11hypothetical protein
LOC_Os11g136201/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11560NANA11+6426097..6426351hypothetical protein
LOC_Os11g11570NANA11+6430524..6430778hypothetical protein
LOC_Os11g11580Os.49868.1.S1_at11/1111+6435787..6444994NB-ARC domain containing protein, expressed
LOC_Os11g11580OsAffx.30932.1.S1_at11/1111+6435787..6444994NB-ARC domain containing protein, expressed
LOC_Os11g11580Os.50218.1.S1_at1/1111+6435787..6444994NB-ARC domain containing protein, expressed
LOC_Os11g11590NANA11+6446126..6446623hypothetical protein
LOC_Os11g11600OsAffx.7080.1.S1_x_at11/1111+6447896..6449204hypothetical protein
LOC_Os11g11610NANA11+6450574..6451151hypothetical protein
LOC_Os11g11620OsAffx.30930.1.S1_s_at11/1111+6457691..6460748ZmEBE-1 protein, putative
LOC_Os11g11620OsAffx.30930.2.S1_at9/1111+6457691..6460748ZmEBE-1 protein, putative
LOC_Os11g11620OsAffx.30930.1.S1_at2/1111+6457691..6460748ZmEBE-1 protein, putative
LOC_Os11g11620Os.53177.1.S1_s_at1/1111+6457691..6460748ZmEBE-1 protein, putative
LOC_Os11g11630NANA11+6467013..6467767hypothetical protein
LOC_Os11g11640OsAffx.7082.1.S1_at11/1111+6468800..6469165hypothetical protein
LOC_Os11g11650OsAffx.30934.1.S1_at11/1111+6472433..6475896expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7080.1.S1_x_at--549--1671Chr11:6448460..6448484 (25 bp)
AGCCCCAGAGATGTGGTGCTCAACA
LOC_Os11g11600
OsAffx.7080.1.S1_x_at--553--791Chr11:6448470..6448494 (25 bp)
ATGTGGTGCTCAACAACAACCGCGA
LOC_Os11g11600
OsAffx.7080.1.S1_x_at--591--2453Chr11:6448484..6448508 (25 bp)
AACAACCGCGACATGAGGCCTCACG
LOC_Os11g11600
OsAffx.7080.1.S1_x_at--492--693Chr11:28331109..28331132 (24 bp)
ATGAGGCCTCACGTGTTCGTCCAGA
LOC_Os11g47890
OsAffx.7080.1.S1_x_at--241--1911Chr11:6448506..6448614 (25 bp)
ACGTGTTCGTCCAGAGGCTCCGGAG
LOC_Os11g11600
OsAffx.7080.1.S1_x_at--129--10692Chr11:6448663..6448687 (25 bp)
TTGTCCACGGTGGTCCTCGACGGGC
LOC_Os11g11600
OsAffx.7080.1.S1_x_at--910--9252Chr11:6448676..6448700 (25 bp)
TCCTCGACGGGCTGCAGATCGGCTT
LOC_Os11g11600
OsAffx.7080.1.S1_x_at--444--9052Chr11:6448688..6448712 (25 bp)
TGCAGATCGGCTTGGGCATCAGCGC
LOC_Os11g11600
OsAffx.7080.1.S1_x_at--943--8272Chr11:6448702..6448726 (25 bp)
GGCATCAGCGCCAGGTGCTGCCTCG
LOC_Os11g11600
OsAffx.7080.1.S1_x_at--983--9091Chr11:6448717..6448741 (25 bp)
TGCTGCCTCGCTGGGAAGCAGACGA
LOC_Os11g11600
OsAffx.7080.1.S1_x_at--679--27757Chr12:16382494..16382585 (25 bp)
AAGAGAAGGGATGCCACGTCAGCAA
NONE
Target Sequence 
AGCCCCAGAGATGTGGTGCTCAACAACAACCGCGACATGAGGCCTCACGTGTTCGTCCAGAGGCTCCGGAGCGCGCCGCC
GGGAGCTGCTGTTGCCGCCACCGCCGCGCGGCCACCGCCTTGTCCACGGTGGTCCTCGACGGGCTGCAGATCGGCTTGGG
CATCAGCGCCAGGTGCTGCCTCGCTGGGAAGCAGACGAGCAGGTCGGCGCCGTCGTCGTCGCCACCACGCCCTTCCCTCC
ACCTCCACCTCCACCTCCGCCGCCGGCCGCCGCCTTCTTCCTCACGACACGCGGCCGACGATGCGGCGCTCCACCCCCTC
TCCCGCCGGCGCGACGCGTACGTGGAGAGGATGGGAGAGGGAGAGGTGGTCGACGGGATATGGCCAGATGGGGGAGGGGA
AAGGCGGCCGGCAGCTGCTGTGCTCGCCCTCCACCGCTCTGCCCGCCACCGCTCCGCCTGCCACTCGCAGACCGCTGCCG
CGCTCGCTCGCTGCCAGCCTCCCGCATCCGCCGGAGAGAAGAGAAGGGATGCCACGTCAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7080.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis