Browse Element(s) Details


OsAffx.30930.2.S1_at

Description tigr:9639.m01107
TID=OsAffx.30930.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AJ437283 DD1A protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g116209/11ZmEBE-1 protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11580Os.49868.1.S1_at11/1111+6435787..6444994NB-ARC domain containing protein, expressed
LOC_Os11g11580OsAffx.30932.1.S1_at11/1111+6435787..6444994NB-ARC domain containing protein, expressed
LOC_Os11g11580Os.50218.1.S1_at1/1111+6435787..6444994NB-ARC domain containing protein, expressed
LOC_Os11g11590NANA11+6446126..6446623hypothetical protein
LOC_Os11g11600OsAffx.7080.1.S1_x_at11/1111+6447896..6449204hypothetical protein
LOC_Os11g11610NANA11+6450574..6451151hypothetical protein
LOC_Os11g11620OsAffx.30930.1.S1_s_at11/1111+6457691..6460748ZmEBE-1 protein, putative
LOC_Os11g11620OsAffx.30930.2.S1_at9/1111+6457691..6460748ZmEBE-1 protein, putative
LOC_Os11g11620OsAffx.30930.1.S1_at2/1111+6457691..6460748ZmEBE-1 protein, putative
LOC_Os11g11620Os.53177.1.S1_s_at1/1111+6457691..6460748ZmEBE-1 protein, putative
LOC_Os11g11630NANA11+6467013..6467767hypothetical protein
LOC_Os11g11640OsAffx.7082.1.S1_at11/1111+6468800..6469165hypothetical protein
LOC_Os11g11650OsAffx.30934.1.S1_at11/1111+6472433..6475896expressed protein
LOC_Os11g11660Os.12698.1.S1_at2/1111+6476188..6478113retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g11670OsAffx.30935.1.S1_at11/1111+6480185..6480935hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30930.2.S1_at--551--7851Chr11:6458319..6458343 (25 bp)
GGTTTCTACTGAACCAGTACCTTAT
LOC_Os11g11620
OsAffx.30930.2.S1_at--22--9931Chr11:6458325..6458349 (25 bp)
TACTGAACCAGTACCTTATTGCTGT
LOC_Os11g11620
OsAffx.30930.2.S1_at--599--5431Chr11:6458329..6458353 (25 bp)
GAACCAGTACCTTATTGCTGTGCCA
LOC_Os11g11620
OsAffx.30930.2.S1_at--286--1731Chr11:6458331..6458355 (25 bp)
ACCAGTACCTTATTGCTGTGCCAGA
LOC_Os11g11620
OsAffx.30930.2.S1_at--338--1191Chr11:6458334..6458358 (25 bp)
AGTACCTTATTGCTGTGCCAGATCG
LOC_Os11g11620
OsAffx.30930.2.S1_at--317--1751Chr11:6458337..6458361 (25 bp)
ACCTTATTGCTGTGCCAGATCGATC
LOC_Os11g11620
OsAffx.30930.2.S1_at--799--10191Chr11:6458341..6458365 (25 bp)
TATTGCTGTGCCAGATCGATCCAAT
LOC_Os11g11620
OsAffx.30930.2.S1_at--211--9131Chr11:6458344..6458368 (25 bp)
TGCTGTGCCAGATCGATCCAATAAT
LOC_Os11g11620
OsAffx.30930.2.S1_at--92--7291Chr11:6458348..6458372 (25 bp)
GTGCCAGATCGATCCAATAATGAGG
LOC_Os11g11620
OsAffx.30930.2.S1_at--1153--6351NONE
GATCCAATAATGAGGTCGATCCTGA
NONE
OsAffx.30930.2.S1_at--95--3191NONE
CAATAATGAGGTCGATCCTGAATCA
NONE
Target Sequence 
GGTTTCTACTGAACCAGTACCTTATTGCTGTGCCAGATCGATCCAATAATGAGGTCGATCCTGAATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30930.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis