Browse Element(s) Details


OsAffx.30932.1.S1_at

Description tigr:9639.m01103
TID=OsAffx.30932.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1158011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11540OsAffx.30936.1.S1_at11/1111+6413041..6413457hypothetical protein
LOC_Os11g11540OsAffx.15878.1.S1_x_at1/1111+6413041..6413457hypothetical protein
LOC_Os11g11550Os.27620.2.S1_x_at11/1111+6415329..6419818NB-ARC domain containing protein, expressed
LOC_Os11g11550Os.27620.3.S1_at10/1111+6415329..6419818NB-ARC domain containing protein, expressed
LOC_Os11g11560NANA11+6426097..6426351hypothetical protein
LOC_Os11g11570NANA11+6430524..6430778hypothetical protein
LOC_Os11g11580Os.49868.1.S1_at11/1111+6435787..6444994NB-ARC domain containing protein, expressed
LOC_Os11g11580OsAffx.30932.1.S1_at11/1111+6435787..6444994NB-ARC domain containing protein, expressed
LOC_Os11g11580Os.50218.1.S1_at1/1111+6435787..6444994NB-ARC domain containing protein, expressed
LOC_Os11g11590NANA11+6446126..6446623hypothetical protein
LOC_Os11g11600OsAffx.7080.1.S1_x_at11/1111+6447896..6449204hypothetical protein
LOC_Os11g11610NANA11+6450574..6451151hypothetical protein
LOC_Os11g11620OsAffx.30930.1.S1_s_at11/1111+6457691..6460748ZmEBE-1 protein, putative
LOC_Os11g11620OsAffx.30930.2.S1_at9/1111+6457691..6460748ZmEBE-1 protein, putative
LOC_Os11g11620OsAffx.30930.1.S1_at2/1111+6457691..6460748ZmEBE-1 protein, putative
LOC_Os11g11620Os.53177.1.S1_s_at1/1111+6457691..6460748ZmEBE-1 protein, putative
LOC_Os11g11630NANA11+6467013..6467767hypothetical protein
LOC_Os11g11640OsAffx.7082.1.S1_at11/1111+6468800..6469165hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30932.1.S1_at--229--9451Chr11:6438187..6438211 (25 bp)
TCTGGAACCTAATCCTTCAGGGAAG
LOC_Os11g11580
OsAffx.30932.1.S1_at--27--10851Chr11:6438221..6438245 (25 bp)
TTGGATAACCTGAACGTCCTGTCGT
LOC_Os11g11580
OsAffx.30932.1.S1_at--11--2871Chr11:6438273..6438297 (25 bp)
AAGTGTTGCCACCTATTGGCGTCTA
LOC_Os11g11580
OsAffx.30932.1.S1_at--1060--2751Chr11:6438301..6438325 (25 bp)
AAGACTTCCTGAGTGGATCCAACAA
LOC_Os11g11580
OsAffx.30932.1.S1_at--1158--9331Chr11:6438419..6438443 (25 bp)
TCGCTGCATATTCGGCAATCCATGG
LOC_Os11g11580
OsAffx.30932.1.S1_at--801--4811Chr11:6438479..6438503 (25 bp)
GCTCTCGACTGTTTGAAGCTATCAT
LOC_Os11g11580
OsAffx.30932.1.S1_at--470--7431Chr11:6438507..6438531 (25 bp)
GTGTACTGTACCTCACTTTTCAGGA
LOC_Os11g11580
OsAffx.30932.1.S1_at--704--10371Chr11:6438593..6438617 (25 bp)
TTTTACGTCAATATGCTTTCTGGCA
LOC_Os11g11580
OsAffx.30932.1.S1_at--537--4931Chr11:6438615..6438639 (25 bp)
GCATTGAGCACCTGAAAACCCTGCA
LOC_Os11g11580
OsAffx.30932.1.S1_at--1092--6071Chr11:6438701..6438725 (25 bp)
GAGTATGCATTCAAGAACGCCTTTA
LOC_Os11g11580
OsAffx.30932.1.S1_at--748--4431Chr11:6438719..6438743 (25 bp)
GCCTTTAGCAGGCATTCAAACTTAA
LOC_Os11g11580
Target Sequence 
TCTGGAACCTAATCCTTCAGGGAAGATCAGTTCCTTGGATAACCTGAACGTCCTGTCGTCACCTCCCATCTTTCTTCAGA
CATTTGAAGTGTTGCCACCTATTGGCGTCTATTCAAGACTTCCTGAGTGGATCCAACAACTCCGCAAACTCCGCATTCTG
AAAATTGCGATCAGACAATTGATGAGGAATGATATTGATATTCTTTCAGGATTGCCTGTGCTCACTGCTGTCTCGCTGCA
TATTCGGCAATCCATGGAAGAAATCATTGTCTTCCACCGCGAGTCATTCCCAGCTCTCGACTGTTTGAAGCTATCATGTA
GTGTACTGTACCTCACTTTTCAGGAAGAAGCAATGCCGAATCTTCGGAGGCTGAAGCTAGGATTCAATGCTCACAGAAGA
GAGTTCTTTTACGTCAATATGCTTTCTGGCATTGAGCACCTGAAAACCCTGCAGGAGGTAGTAGGACAAATTGGTTTAGG
CTTTGGTGCAGGGGAATCGGAGTGGGCAGCTGCAGAGTATGCATTCAAGAACGCCTTTAGCAGGCATTCAAACTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30932.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis