Browse Element(s) Details


OsAffx.30936.1.S1_at

Description tigr:9639.m01097
TID=OsAffx.30936.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1168011/11LGC1, putative
LOC_Os11g1154011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11630NANA11+6467013..6467767hypothetical protein
LOC_Os11g11640OsAffx.7082.1.S1_at11/1111+6468800..6469165hypothetical protein
LOC_Os11g11650OsAffx.30934.1.S1_at11/1111+6472433..6475896expressed protein
LOC_Os11g11660Os.12698.1.S1_at2/1111+6476188..6478113retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g11670OsAffx.30935.1.S1_at11/1111+6480185..6480935hypothetical protein
LOC_Os11g11680OsAffx.30936.1.S1_at11/1111+6490267..6490677LGC1, putative
LOC_Os11g11694Os.45957.1.S1_at11/1111+6493100..6498258retrotransposon protein, putative, unclassified, expressed
LOC_Os11g11694Os.45957.2.S1_at5/1111+6493100..6498258retrotransposon protein, putative, unclassified, expressed
LOC_Os11g11694Os.45957.2.S1_x_at5/1111+6493100..6498258retrotransposon protein, putative, unclassified, expressed
LOC_Os11g11710Os.9643.1.S1_at11/1111+6505462..6506684expressed protein
LOC_Os11g11720OsAffx.7083.1.S1_x_at11/1111+6511935..6513287Serpin family protein
LOC_Os11g11720OsAffx.7083.1.S1_at11/1111+6511935..6513287Serpin family protein
LOC_Os11g11730Os.9607.1.S1_at11/1111+6515329..6517148expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30936.1.S1_at--48--4473Chr11:6490427..6490451 (25 bp)
GCCTGCCGGAGTTCCAGGTGACGAT
LOC_Os11g11680
OsAffx.30936.1.S1_at--982--3953Chr11:6490433..6490457 (25 bp)
CGGAGTTCCAGGTGACGATCGGCAA
LOC_Os11g11680
OsAffx.30936.1.S1_at--146--8033Chr11:6490434..6490458 (25 bp)
GGAGTTCCAGGTGACGATCGGCAAC
LOC_Os11g11680
OsAffx.30936.1.S1_at--873--1233Chr11:6490436..6490460 (25 bp)
AGTTCCAGGTGACGATCGGCAACGA
LOC_Os11g11680
OsAffx.30936.1.S1_at--344--10673Chr11:6490438..6490462 (25 bp)
TTCCAGGTGACGATCGGCAACGAGT
LOC_Os11g11680
OsAffx.30936.1.S1_at--791--7373Chr11:6490444..6490468 (25 bp)
GTGACGATCGGCAACGAGTGCTCGT
LOC_Os11g11680
OsAffx.30936.1.S1_at--73--8953Chr11:6490445..6490469 (25 bp)
TGACGATCGGCAACGAGTGCTCGTG
LOC_Os11g11680
OsAffx.30936.1.S1_at--1058--9433Chr11:6490451..6490475 (25 bp)
TCGGCAACGAGTGCTCGTGCCCGGA
LOC_Os11g11680
OsAffx.30936.1.S1_at--1099--7073Chr11:6490567..6490591 (25 bp)
GTCAACGACGGCCTGCAGATCGTGA
LOC_Os11g11680
OsAffx.30936.1.S1_at--917--3253Chr11:6490569..6490593 (25 bp)
CAACGACGGCCTGCAGATCGTGAAG
LOC_Os11g11680
OsAffx.30936.1.S1_at--518--9334Chr11:6490597..6490621 (25 bp)
TCGCCGGTGGTGTTCACGTACGCCG
LOC_Os11g11680
Target Sequence 
GCCTGCCGGAGTTCCAGGTGACGATCGGCAACGAGTGCTCGTGCCCGGAGGGNGACGTCGTGNTGTCCTGCCTCGACGGC
GTGCCCGCCGGCNTCGACCGGAGCAAGATCCACNCCGCCGGCAGCGACGGNCTCTGCCTCGTCAACGACGGCCTGCAGAT
CGTGAAGGGGTCGCCGGTGGTGTTCACGTACGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30936.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis