Browse Element(s) Details


OsAffx.7083.1.S1_at

Description tigr:9639.m01117
TID=OsAffx.7083.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Serpin (serine protease inhibitor)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1172011/11Serpin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11680OsAffx.30936.1.S1_at11/1111+6490267..6490677LGC1, putative
LOC_Os11g11694Os.45957.1.S1_at11/1111+6493100..6498258retrotransposon protein, putative, unclassified, expressed
LOC_Os11g11694Os.45957.2.S1_at5/1111+6493100..6498258retrotransposon protein, putative, unclassified, expressed
LOC_Os11g11694Os.45957.2.S1_x_at5/1111+6493100..6498258retrotransposon protein, putative, unclassified, expressed
LOC_Os11g11710Os.9643.1.S1_at11/1111+6505462..6506684expressed protein
LOC_Os11g11720OsAffx.7083.1.S1_x_at11/1111+6511935..6513287Serpin family protein
LOC_Os11g11720OsAffx.7083.1.S1_at11/1111+6511935..6513287Serpin family protein
LOC_Os11g11730Os.9607.1.S1_at11/1111+6515329..6517148expressed protein
LOC_Os11g11740OsAffx.30937.1.S1_at11/1111+6518181..6518816hypothetical protein
LOC_Os11g11750OsAffx.30938.1.S1_at11/1111+6521026..6521445hypothetical protein
LOC_Os11g11760OsAffx.18806.1.S1_at11/1111+6526417..6527775Serpin family protein
LOC_Os11g11770OsAffx.18807.1.S1_at11/1111+6528329..6531394NB-ARC domain containing protein, expressed
LOC_Os11g11780Os.51246.1.S1_at11/1111+6536097..6537086serine/threonine protein kinase, putative, expressed
LOC_Os11g11790Os.21245.1.S1_at10/1111+6537392..6541495expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004867molecular_functionserine-type endopeptidase inhibitor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7083.1.S1_at--780--4011Chr11:6512719..6512743 (25 bp)
CGTACAAGGCGACGAGCGACACCTA
LOC_Os11g11720
OsAffx.7083.1.S1_at--866--2211Chr11:6512722..6512746 (25 bp)
ACAAGGCGACGAGCGACACCTACAA
LOC_Os11g11720
OsAffx.7083.1.S1_at--866--5771Chr11:6512729..6512753 (25 bp)
GACGAGCGACACCTACAACCTCAAG
LOC_Os11g11720
OsAffx.7083.1.S1_at--465--4371Chr11:6512908..6512932 (25 bp)
CCAAGTTCAAGCTCGCCTTCTGCCA
LOC_Os11g11720
OsAffx.7083.1.S1_at--660--8311Chr11:6512965..6512989 (25 bp)
GGCTCCGCCTGCCGTTCGACATGTT
LOC_Os11g11720
OsAffx.7083.1.S1_at--430--4631Chr11:6513039..6513063 (25 bp)
GCGATGTTCGTGAGCAGCGTGATCC
LOC_Os11g11720
OsAffx.7083.1.S1_at--57--8811Chr11:6513043..6513067 (25 bp)
TGTTCGTGAGCAGCGTGATCCACAA
LOC_Os11g11720
OsAffx.7083.1.S1_at--78--9431Chr11:6513046..6513070 (25 bp)
TCGTGAGCAGCGTGATCCACAAGGT
LOC_Os11g11720
OsAffx.7083.1.S1_at--342--8911Chr11:6513049..6513073 (25 bp)
TGAGCAGCGTGATCCACAAGGTGGT
LOC_Os11g11720
OsAffx.7083.1.S1_at--81--4711Chr11:6513102..6513126 (25 bp)
GCGGCGGCGTACACGGAGGAGTCCG
LOC_Os11g11720
OsAffx.7083.1.S1_at--885--1751Chr11:6513133..6513157 (25 bp)
ACCTCGGGTGCTCGCTGTACGACGA
LOC_Os11g11720
Target Sequence 
CGTACAAGGCGACGAGCGACACCTACAACCTCAAGCTCCGCTACAGCCTCCCGTCGTTCGCCATGCTCGTCTTCCTCCCC
GACGACCGCGACGGCCTCCCGGGCCTCCTCGACAGGATCACCGCCTCGCCGGAGTTCGTCGACGAGCACCTCCCGCCGGG
GTGCGTCCCCGTGGGCAGGTTCCGGGTGCCCAAGTTCAAGCTCGCCTTCTGCCACTACGGCATCGCCGACGTCCTCCGCG
GCCTCGGGCTCCGCCTGCCGTTCGACATGTTCGCCGCGGAGATGAGCGGCATCGCGGTGGAGGGCGACGGCGAGGACGCG
GCGATGTTCGTGAGCAGCGTGATCCACAAGGTGGTGGTGGAGGTGAACGAGGAGGGGAGCGAGGCGGCGGCGTACACGGA
GGAGTCCGACGACGACCTCGGGTGCTCGCTGTACGACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7083.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis