Browse Element(s) Details


Os.21245.1.S1_at

Description gb:AK066950.1
DB_XREF= gi:32976968
TID=Os.21245.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21245 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013090P15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013090P15, full insert sequence.
FL= gb:AK066950.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1179010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11720OsAffx.7083.1.S1_x_at11/1111+6511935..6513287Serpin family protein
LOC_Os11g11720OsAffx.7083.1.S1_at11/1111+6511935..6513287Serpin family protein
LOC_Os11g11730Os.9607.1.S1_at11/1111+6515329..6517148expressed protein
LOC_Os11g11740OsAffx.30937.1.S1_at11/1111+6518181..6518816hypothetical protein
LOC_Os11g11750OsAffx.30938.1.S1_at11/1111+6521026..6521445hypothetical protein
LOC_Os11g11760OsAffx.18806.1.S1_at11/1111+6526417..6527775Serpin family protein
LOC_Os11g11770OsAffx.18807.1.S1_at11/1111+6528329..6531394NB-ARC domain containing protein, expressed
LOC_Os11g11780Os.51246.1.S1_at11/1111+6536097..6537086serine/threonine protein kinase, putative, expressed
LOC_Os11g11790Os.21245.1.S1_at10/1111+6537392..6541495expressed protein
LOC_Os11g11800NANA11+6543833..6544810Zinc knuckle family protein
LOC_Os11g11810Os.28607.1.S1_at11/1111+6549983..6557156NB-ARC domain containing protein, expressed
LOC_Os11g11810Os.28607.1.S2_at11/1111+6549983..6557156NB-ARC domain containing protein, expressed
LOC_Os11g11820OsAffx.3812.1.S1_at1/1111+6558352..6561558retrotransposon protein, putative, unclassified
LOC_Os11g11820OsAffx.3812.1.S1_x_at1/1111+6558352..6561558retrotransposon protein, putative, unclassified
LOC_Os11g11830NANA11+6563137..6564963retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21245.1.S1_at--566--8211Chr11:6537898..6537922 (25 bp)
GGAATCCTCTTCTGTGCTGAACAAA
LOC_Os11g11790
Os.21245.1.S1_at--842--8491Chr11:6537769..6537793 (25 bp)
TGGCATGGTGCCTTCTTGTACATGA
LOC_Os11g11790
Os.21245.1.S1_at--697--6411Chr11:6537740..6537764 (25 bp)
GATCTAGAATCTTCACGTGGCTTCC
LOC_Os11g11790
Os.21245.1.S1_at--834--10191Chr11:6537707..6537731 (25 bp)
TATTTGGACCTGTTGCTTTCTGATT
LOC_Os11g11790
Os.21245.1.S1_at--519--7431Chr11:6537673..6537697 (25 bp)
GTGTTTACTTGTCCTTCACACAATC
LOC_Os11g11790
Os.21245.1.S1_at--289--4271Chr11:6537614..6537638 (25 bp)
CCTGTTACCTCCCTTGATGAAATCA
LOC_Os11g11790
Os.21245.1.S1_at--414--2271Chr11:6537479..6537503 (25 bp)
AAATCTTGGTTCTAACTGGCTGCCC
LOC_Os11g11790
Os.21245.1.S1_at--657--8331Chr11:6537462..6537486 (25 bp)
GGCTGCCCTCAGAATATGTTGTCTA
LOC_Os11g11790
Os.21245.1.S1_at--887--8811Chr11:6537446..6537470 (25 bp)
TGTTGTCTATAGAATCCACCTGATA
LOC_Os11g11790
Os.21245.1.S1_at--1095--5191Chr11:6537419..6537443 (25 bp)
GAATTCGGCCGTTTGATAATCCTTT
LOC_Os11g11790
Os.21245.1.S1_at--965--10331Chr11:6537392..6537415 (24 bp)
TTTAAGTCTATTGTTTGTCCTGAGC
NONE
Target Sequence 
GGAATCCTCTTCTGTGCTGAACAAACAAAACAATTTTGCAGACCAATCAAGCTCAAAAGATCAACTGCATTATTCTTTCA
ACAATATGGGGCTTTCAGATGTCTCTCCTGCTGTGAGTGAGCTGCCGAATGGCATGGTGCCTTCTTGTACATGACAAGGA
TCTAGAATCTTCACGTGGCTTCCCNGTCAGTTATTTGGACCTGTTGCTTTCTGATTGTGCATTTTGTGTTTACTTGTCCT
TCACACAATCATCGTCATCAAAATACCTTTGATTTCCTACACTCCCTGTTACCTCCCTTGATGAAATCAGGGGGATTCAT
GGGNACAGCTACNTNTTCTGTCTGCATTNTGTNTAGTGANGTGGCATACCTAGTACNTGTTTTGTCTCCNTCCTGTTTGG
CAGAGCAACAGGTTGTAATAAATCTTGGTTCTAACTGGCTGCCCTCAGAATATGTTGTCTATAGAATCCACCTGATAGGG
AATTCGGCCGTTTGATAATCCTTTATTTTTAAGTCTATTGTTTGTCCTGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21245.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis