Browse Element(s) Details


Os.28607.1.S2_at

Description gb:AK072355.1
DB_XREF= gi:32982378
TID=Os.28607.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28607 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-181-B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023055L12, full insert sequence.
FL= gb:AK072355.1 gb:AK111306.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1181011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11760OsAffx.18806.1.S1_at11/1111+6526417..6527775Serpin family protein
LOC_Os11g11770OsAffx.18807.1.S1_at11/1111+6528329..6531394NB-ARC domain containing protein, expressed
LOC_Os11g11780Os.51246.1.S1_at11/1111+6536097..6537086serine/threonine protein kinase, putative, expressed
LOC_Os11g11790Os.21245.1.S1_at10/1111+6537392..6541495expressed protein
LOC_Os11g11800NANA11+6543833..6544810Zinc knuckle family protein
LOC_Os11g11810Os.28607.1.S1_at11/1111+6549983..6557156NB-ARC domain containing protein, expressed
LOC_Os11g11810Os.28607.1.S2_at11/1111+6549983..6557156NB-ARC domain containing protein, expressed
LOC_Os11g11820OsAffx.3812.1.S1_at1/1111+6558352..6561558retrotransposon protein, putative, unclassified
LOC_Os11g11820OsAffx.3812.1.S1_x_at1/1111+6558352..6561558retrotransposon protein, putative, unclassified
LOC_Os11g11830NANA11+6563137..6564963retrotransposon protein, putative, unclassified
LOC_Os11g11840NANA11+6567391..6569030hypothetical protein
LOC_Os11g11850NANA11+6569752..6570917hypothetical protein
LOC_Os11g11860NANA11+6577193..6580304retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28607.1.S2_at--83--5651Chr11:6556575..6556599 (25 bp)
GACAGCGATGACTTGTCCGACGAAA
LOC_Os11g11810
Os.28607.1.S2_at--209--8371Chr11:6556623..6556647 (25 bp)
GGCGAGTTCTCTACAAGGGCCAACG
LOC_Os11g11810
Os.28607.1.S2_at--789--2871Chr11:6556637..6556661 (25 bp)
AAGGGCCAACGCGTCAACACCGAAG
LOC_Os11g11810
Os.28607.1.S2_at--1141--8071Chr11:6556679..6556703 (25 bp)
GGACCGGAGGGCCAATAACTTCATC
LOC_Os11g11810
Os.28607.1.S2_at--1131--5051Chr11:6556759..6556783 (25 bp)
GCAGCATCGACGAACGACTGTGGAT
LOC_Os11g11810
Os.28607.1.S2_at--113--4051Chr11:6556785..6556809 (25 bp)
CGAGATCTCGATGAGTGCCAACTCT
LOC_Os11g11810
Os.28607.1.S2_at--1074--2811Chr11:6556837..6556861 (25 bp)
AAGTTCGACGAGATCATTGCCAGGA
LOC_Os11g11810
Os.28607.1.S2_at--683--831Chr11:6556872..6556896 (25 bp)
ATGGAAGCCAATCGAGTCACCGCGT
LOC_Os11g11810
Os.28607.1.S2_at--104--10372Chr11:6556979..6557003 (25 bp)
TTTTTCTAGTATGGTACTCCCTCCG
LOC_Os11g11810
Os.28607.1.S2_at--818--2371Chr11:6557022..6557046 (25 bp)
AAACCCCTAATCAATCGCCTTGTGA
LOC_Os11g11810
Os.28607.1.S2_at--1136--5492Chr11:6557045..6557069 (25 bp)
GAACACTGGATGAACTCACGCGAAA
LOC_Os11g11810
Target Sequence 
GACAGCGATGACTTGTCCGACGAAACAGAGGGAATAGCCGACGACGAAGGCGAGTTCTCTACAAGGGCCAACGCGTCAAC
ACCGAAGGTGGATGAGGACGAGGTGGACCGGAGGGCCAATAACTTCATCGCCAGGTTCAGGAAGCAGATCACGATCAGGA
ATTCAGGATTCGCCAAAAAGGAGAGCAGCATCGACGAACGACTGTGGATACGAGATCTCGATGAGTGCCAACTCTCCAAG
AGAGGTGGACGATTTTAAGAAGAAGTTCGACGAGATCATTGCCAGGAACAGGCACACATGGAAGCCAATCGAGTCACCGC
GTTCTGTCAAGCACGGCAAGTATTTCGTTCGCTGCCCGCCGTCGCTAATCACCAGCGCTGTCTTTTCCTTTTTCTTTCTT
TCTATTTTTCTAGTATGGTACTCCCTCCGTTTCAGGATATTGTCAGGAAACCCCTAATCAATCGCCTTGTGAACACTGGA
TGAACTCACGCGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28607.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis