Browse Element(s) Details


Os.51246.1.S1_at

Description gb:AK062328.1
DB_XREF= gi:32972346
TID=Os.51246.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51246 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-101-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-101-D06, full insert sequence.
FL= gb:AK062328.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1178011/11serine/threonine protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11720OsAffx.7083.1.S1_x_at11/1111+6511935..6513287Serpin family protein
LOC_Os11g11720OsAffx.7083.1.S1_at11/1111+6511935..6513287Serpin family protein
LOC_Os11g11730Os.9607.1.S1_at11/1111+6515329..6517148expressed protein
LOC_Os11g11740OsAffx.30937.1.S1_at11/1111+6518181..6518816hypothetical protein
LOC_Os11g11750OsAffx.30938.1.S1_at11/1111+6521026..6521445hypothetical protein
LOC_Os11g11760OsAffx.18806.1.S1_at11/1111+6526417..6527775Serpin family protein
LOC_Os11g11770OsAffx.18807.1.S1_at11/1111+6528329..6531394NB-ARC domain containing protein, expressed
LOC_Os11g11780Os.51246.1.S1_at11/1111+6536097..6537086serine/threonine protein kinase, putative, expressed
LOC_Os11g11790Os.21245.1.S1_at10/1111+6537392..6541495expressed protein
LOC_Os11g11800NANA11+6543833..6544810Zinc knuckle family protein
LOC_Os11g11810Os.28607.1.S1_at11/1111+6549983..6557156NB-ARC domain containing protein, expressed
LOC_Os11g11810Os.28607.1.S2_at11/1111+6549983..6557156NB-ARC domain containing protein, expressed
LOC_Os11g11820OsAffx.3812.1.S1_at1/1111+6558352..6561558retrotransposon protein, putative, unclassified
LOC_Os11g11820OsAffx.3812.1.S1_x_at1/1111+6558352..6561558retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51246.1.S1_at--419--6151Chr11:6536386..6536410 (25 bp)
GAGGTGAAATCTCCACTCAATCAGA
LOC_Os11g11780
Os.51246.1.S1_at--775--10151Chr11:6536652..6536676 (25 bp)
TATCACTGAAGTACCCATCGTTAGA
LOC_Os11g11780
Os.51246.1.S1_at--58--6791Chr11:6536671..6536695 (25 bp)
GTTAGACACAAATTGCCTCCAGCAG
LOC_Os11g11780
Os.51246.1.S1_at--1094--8111Chr11:6536717..6536741 (25 bp)
GGACTGAGCTGTGTTCAGACCAACC
LOC_Os11g11780
Os.51246.1.S1_at--203--3411Chr11:6536732..6536756 (25 bp)
CAGACCAACCGGAAGGACAGGCCTT
LOC_Os11g11780
Os.51246.1.S1_at--1066--5071Chr11:6536792..6536815 (24 bp)
GCACCATACTCCCTTGTAGACAAGA
LOC_Os11g11780
Os.51246.1.S1_at--460--8751Chr11:6536806..6536908 (25 bp)
TGTAGACAAGATCTCTCCCTTTCCA
LOC_Os11g11780
Os.51246.1.S1_at--1075--4291Chr11:6536901..6536925 (25 bp)
CCTTTCCAACATGGTCGTCAGTTTG
LOC_Os11g11780
Os.51246.1.S1_at--606--5951Chr11:6536938..6536962 (25 bp)
GAGCAACCGAGATGTATGAGCCTTA
LOC_Os11g11780
Os.51246.1.S1_at--479--5871Chr11:6536955..6536979 (25 bp)
GAGCCTTATCATTTATGCTTCTTAG
LOC_Os11g11780
Os.51246.1.S1_at--173--6591Chr11:6537037..6537061 (25 bp)
GATTCCATCTCCTTTTGTACTTGTA
LOC_Os11g11780
Target Sequence 
GAGGTGAAATCTCCACTCAATCAGATATATACAGTTTAGGTCTTCTAATTATCGAGATCACAACAGGGGAGAAAAACTTC
CCCAATAGAGAGGACATCATTGCTAAGAACTTCATTGAGAATGTACGCCGAAATCGGACCAATATTGTGCATATATCACT
GAAGTACCCATCGTTAGACACAAATTGCCTCCAGCAGGTAAAGACATGCATTGAAATTGGACTGAGCTGTGTTCAGACCA
ACCGGAAGGACAGGCCTTCTATAGGGGAAATTGTCAATATGCTCAGTTGAGGAGCACCATACTCCCTTGTAGACAAGATC
TCTCCCTTTCCAACATGGTCGTCAGTTTGGGAGAGGCACTGGAGCAACCGAGATGTATGAGCCTTATCATTTATGCTTCT
TAGCTACAAGAAATAAGATCCTATGAAAGAGATTCTCATCTCGAAATAAATGTTCTTACAGATTCCATCTCCTTTTGTAC
TTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51246.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis