Browse Element(s) Details


Os.9607.1.S1_at

Description gb:AK100785.1
DB_XREF= gi:32985994
TID=Os.9607.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9607 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023120N10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023120N10, full insert sequence.
FL= gb:AK100785.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1173011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11680OsAffx.30936.1.S1_at11/1111+6490267..6490677LGC1, putative
LOC_Os11g11694Os.45957.1.S1_at11/1111+6493100..6498258retrotransposon protein, putative, unclassified, expressed
LOC_Os11g11694Os.45957.2.S1_at5/1111+6493100..6498258retrotransposon protein, putative, unclassified, expressed
LOC_Os11g11694Os.45957.2.S1_x_at5/1111+6493100..6498258retrotransposon protein, putative, unclassified, expressed
LOC_Os11g11710Os.9643.1.S1_at11/1111+6505462..6506684expressed protein
LOC_Os11g11720OsAffx.7083.1.S1_x_at11/1111+6511935..6513287Serpin family protein
LOC_Os11g11720OsAffx.7083.1.S1_at11/1111+6511935..6513287Serpin family protein
LOC_Os11g11730Os.9607.1.S1_at11/1111+6515329..6517148expressed protein
LOC_Os11g11740OsAffx.30937.1.S1_at11/1111+6518181..6518816hypothetical protein
LOC_Os11g11750OsAffx.30938.1.S1_at11/1111+6521026..6521445hypothetical protein
LOC_Os11g11760OsAffx.18806.1.S1_at11/1111+6526417..6527775Serpin family protein
LOC_Os11g11770OsAffx.18807.1.S1_at11/1111+6528329..6531394NB-ARC domain containing protein, expressed
LOC_Os11g11780Os.51246.1.S1_at11/1111+6536097..6537086serine/threonine protein kinase, putative, expressed
LOC_Os11g11790Os.21245.1.S1_at10/1111+6537392..6541495expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9607.1.S1_at--103--3391Chr11:6515764..6515788 (25 bp)
CAGCCGAATCAACCGTCGACAAGGA
LOC_Os11g11730
Os.9607.1.S1_at--598--351Chr11:6515710..6515734 (25 bp)
ATAAGAACACCTATCCAGCGGCCGG
LOC_Os11g11730
Os.9607.1.S1_at--16--5311Chr11:6515673..6515697 (25 bp)
GAAGGAGACCTCTTCGGCAGCCGGA
LOC_Os11g11730
Os.9607.1.S1_at--227--4531Chr11:6515618..6515642 (25 bp)
GCCCCGCCGACAACTTATGTTTAAT
LOC_Os11g11730
Os.9607.1.S1_at--329--10391Chr11:6515567..6515591 (25 bp)
TTAGGATGCTATACGAACTTTAAAT
LOC_Os11g11730
Os.9607.1.S1_at--142--8032Chr03:26544595..26544614 (20 bp)
GGAGTTAATCGAACAAGGTCTAAGT
NONE
Os.9607.1.S1_at--863--7151Chr11:6515455..6515479 (25 bp)
GTCTAAGTTGATACTCTGATGTGTC
LOC_Os11g11730
Os.9607.1.S1_at--996--9671Chr11:6515391..6515415 (25 bp)
TCAACCATAGCCGTTAACTAAAATT
LOC_Os11g11730
Os.9607.1.S1_at--518--3131Chr11:6515370..6515394 (25 bp)
AATTTTGTGGCAAAGCAGCAAACAA
LOC_Os11g11730
Os.9607.1.S1_at--483--5211Chr11:6515337..6515361 (25 bp)
GAATTTGGTCCAAGTATTCGCCAAG
LOC_Os11g11730
Os.9607.1.S1_at--801--7771Chr11:6515331..6515355 (25 bp)
GGTCCAAGTATTCGCCAAGGCTGTG
LOC_Os11g11730
Target Sequence 
CAGCCGAATCAACCGTCGACAAGGAGACCTCTGCGGTGGCCGGATCAACCGCCGATAAGAACACCTATCCAGCGGCCGGA
TCAGCCGCCGAGAAGGAGACCTCTTCGGCAGCCGGATCAGCTCCTGTCGTCGACACTGCGCCTGCGGCCCCGCCGACAAC
TTATGTTTAATTACAAACATTCGGTACTTAATATTTTTTAGGATGCTATACGAACTTTAAATAACTCTTCCAAAATTTTT
ACTACACCAATAAAAAATCCTTACAAAATTTTGACTACAGCAATGTTTGTAAGGAGTTAATCGAACAAGGTCTAAGTTGA
TACTCTGATGTGTCTNAATGTTTCCTAAACAAAATATTGGNATGAAATTTTTCANTCAACCATAGCCGTTAACTAAAATT
TTGTGGCAAAGCAGCAAACAAAAATTGAAGAATTTGGTCCAAGTATTCGCCAAGGCTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9607.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis