Browse Element(s) Details


OsAffx.30937.1.S1_at

Description tigr:9639.m01119
TID=OsAffx.30937.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1174011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11694Os.45957.1.S1_at11/1111+6493100..6498258retrotransposon protein, putative, unclassified, expressed
LOC_Os11g11694Os.45957.2.S1_at5/1111+6493100..6498258retrotransposon protein, putative, unclassified, expressed
LOC_Os11g11694Os.45957.2.S1_x_at5/1111+6493100..6498258retrotransposon protein, putative, unclassified, expressed
LOC_Os11g11710Os.9643.1.S1_at11/1111+6505462..6506684expressed protein
LOC_Os11g11720OsAffx.7083.1.S1_x_at11/1111+6511935..6513287Serpin family protein
LOC_Os11g11720OsAffx.7083.1.S1_at11/1111+6511935..6513287Serpin family protein
LOC_Os11g11730Os.9607.1.S1_at11/1111+6515329..6517148expressed protein
LOC_Os11g11740OsAffx.30937.1.S1_at11/1111+6518181..6518816hypothetical protein
LOC_Os11g11750OsAffx.30938.1.S1_at11/1111+6521026..6521445hypothetical protein
LOC_Os11g11760OsAffx.18806.1.S1_at11/1111+6526417..6527775Serpin family protein
LOC_Os11g11770OsAffx.18807.1.S1_at11/1111+6528329..6531394NB-ARC domain containing protein, expressed
LOC_Os11g11780Os.51246.1.S1_at11/1111+6536097..6537086serine/threonine protein kinase, putative, expressed
LOC_Os11g11790Os.21245.1.S1_at10/1111+6537392..6541495expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30937.1.S1_at--1087--1311Chr11:6518757..6518781 (25 bp)
AGAGGAGTGTGAGAGTCGTAAAATA
LOC_Os11g11740
OsAffx.30937.1.S1_at--124--8031Chr11:6518717..6518741 (25 bp)
GGAGTGCAGAAGATTGAGCAACAAC
LOC_Os11g11740
OsAffx.30937.1.S1_at--981--6591Chr11:6518706..6518730 (25 bp)
GATTGAGCAACAACATAGGGAGAAG
LOC_Os11g11740
OsAffx.30937.1.S1_at--1143--971Chr11:6518315..6518339 (25 bp)
AGGAGGCCAAAAATAGCGGTGTGCT
LOC_Os11g11740
OsAffx.30937.1.S1_at--1046--871Chr11:6518312..6518336 (25 bp)
AGGCCAAAAATAGCGGTGTGCTGCA
LOC_Os11g11740
OsAffx.30937.1.S1_at--434--1872Chr11:6518263..6518287 (25 bp)
ACGAGCGGCGGTGCTTACGATGCAA
LOC_Os11g11740
OsAffx.30937.1.S1_at--614--1612Chr11:6518260..6518284 (25 bp)
AGCGGCGGTGCTTACGATGCAAAGA
LOC_Os11g11740
OsAffx.30937.1.S1_at--665--7311Chr11:6518253..6518277 (25 bp)
GTGCTTACGATGCAAAGACCTGGAT
LOC_Os11g11740
OsAffx.30937.1.S1_at--1134--2331Chr11:6518240..6518264 (25 bp)
AAAGACCTGGATCTAGAGCCGCTGC
LOC_Os11g11740
OsAffx.30937.1.S1_at--946--9532Chr11:6518229..6518253 (25 bp)
TCTAGAGCCGCTGCGGACGGAGCGG
LOC_Os11g11740
OsAffx.30937.1.S1_at--493--5751Chr11:6518214..6518238 (25 bp)
GACGGAGCGGCTTGCCGTTGTGGAC
LOC_Os11g11740
Target Sequence 
AGAGGAGTGTGAGAGTCGTAAAATAGGGAGGAAGGGAGGGGGAGTGCAGAAGATTGAGCAACAACATAGGGAGAAGGAGA
CTAGGAGAGAGAGGAGGCCAAAAATAGCGGTGTGCTGCACCGGCGGCAAGGGGACCCACGACGACGAGCGGCGGTGCTTA
CGATGCAAAGACCTGGATCTAGAGCCGCTGCGGACGGAGCGGCTTGCCGTTGTGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30937.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis