Browse Element(s) Details


OsAffx.18807.1.S1_at

Description tigr:9639.m01122
TID=OsAffx.18807.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1177011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11710Os.9643.1.S1_at11/1111+6505462..6506684expressed protein
LOC_Os11g11720OsAffx.7083.1.S1_x_at11/1111+6511935..6513287Serpin family protein
LOC_Os11g11720OsAffx.7083.1.S1_at11/1111+6511935..6513287Serpin family protein
LOC_Os11g11730Os.9607.1.S1_at11/1111+6515329..6517148expressed protein
LOC_Os11g11740OsAffx.30937.1.S1_at11/1111+6518181..6518816hypothetical protein
LOC_Os11g11750OsAffx.30938.1.S1_at11/1111+6521026..6521445hypothetical protein
LOC_Os11g11760OsAffx.18806.1.S1_at11/1111+6526417..6527775Serpin family protein
LOC_Os11g11770OsAffx.18807.1.S1_at11/1111+6528329..6531394NB-ARC domain containing protein, expressed
LOC_Os11g11780Os.51246.1.S1_at11/1111+6536097..6537086serine/threonine protein kinase, putative, expressed
LOC_Os11g11790Os.21245.1.S1_at10/1111+6537392..6541495expressed protein
LOC_Os11g11800NANA11+6543833..6544810Zinc knuckle family protein
LOC_Os11g11810Os.28607.1.S1_at11/1111+6549983..6557156NB-ARC domain containing protein, expressed
LOC_Os11g11810Os.28607.1.S2_at11/1111+6549983..6557156NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18807.1.S1_at--321--4911Chr11:6528898..6528922 (25 bp)
GCTTCATTGTCTAAGATGCCGCTTC
LOC_Os11g11770
OsAffx.18807.1.S1_at--565--8891Chr11:6528752..6528776 (25 bp)
TGAGTGCCCGGTGTTTCAGGACCAT
LOC_Os11g11770
OsAffx.18807.1.S1_at--1021--811Chr11:6528729..6528753 (25 bp)
ATGGACGACGCCTGAAGTATCTAGC
LOC_Os11g11770
OsAffx.18807.1.S1_at--949--1191Chr11:6528714..6528738 (25 bp)
AGTATCTAGCTCTAAGCCGGTGTCA
LOC_Os11g11770
OsAffx.18807.1.S1_at--1114--3971Chr11:6528697..6528721 (25 bp)
CGGTGTCACCTTGGGCATGATGCAT
LOC_Os11g11770
OsAffx.18807.1.S1_at--372--2871Chr11:6528658..6528682 (25 bp)
AAGTGTGTGCCGAACCTGACATATT
LOC_Os11g11770
OsAffx.18807.1.S1_at--923--2971Chr11:6528610..6528634 (25 bp)
AATGGTGCACACACTTTGGTTCTTC
LOC_Os11g11770
OsAffx.18807.1.S1_at--575--10851Chr11:6528595..6528619 (25 bp)
TTGGTTCTTCCTGCAAAGTCGTTTC
LOC_Os11g11770
OsAffx.18807.1.S1_at--505--2851Chr11:6528580..6528604 (25 bp)
AAGTCGTTTCCGCTGCTGAAGACAC
LOC_Os11g11770
OsAffx.18807.1.S1_at--986--2231Chr11:6528519..6528543 (25 bp)
AAATTGGAGCTGACGCCCTTAAATG
LOC_Os11g11770
OsAffx.18807.1.S1_at--1083--9511Chr11:6528461..6528485 (25 bp)
TCTAAAGAGCGTCCCTGAAGGCATT
LOC_Os11g11770
Target Sequence 
GCTTCATTGTCTAAGATGCCGCTTCTTTATAGCTTGCTTCTGTGTGCAAGTGATGAGGAGGAGAAACTTAACATCGAAAA
ACTCGTACCGACATCCACAATGCTCCAAAAGCTAATTATCAGAGGATGCACCAGTGAGAGCACACTTGAGTGCCCGGTGT
TTCAGGACCATGGACGACGCCTGAAGTATCTAGCTCTAAGCCGGTGTCACCTTGGGCATGATGCATTTGAGAGGCTCGAA
AAGTGTGTGCCGAACCTGACATATTTGAGTCTTAACAAGGTGCATACCAATGGTGCACACACTTTGGTTCTTCCTGCAAA
GTCGTTTCCGCTGCTGAAGACACTCGTCTTGAGGAACATGTCCAATGTCAATCTTCTGAAAATTGGAGCTGACGCCCTTA
AATGTATCGAAGGTTTATACATTGTGTCATTGTCAAATCTAAAGAGCGTCCCTGAAGGCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18807.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis