Browse Element(s) Details


Os.45957.2.S1_x_at

Description gb:AK064186.1
DB_XREF= gi:32974204
TID=Os.45957.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.45957 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0686C03.48 (P0686C03.48), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-104-C01, full insert sequence.
FL= gb:AK064186.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g116945/11retrotransposon protein, putative, unclassified, expressed
LOC_Os04g109901/11retrotransposon protein, putative, unclassified
LOC_Os07g122601/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11640OsAffx.7082.1.S1_at11/1111+6468800..6469165hypothetical protein
LOC_Os11g11650OsAffx.30934.1.S1_at11/1111+6472433..6475896expressed protein
LOC_Os11g11660Os.12698.1.S1_at2/1111+6476188..6478113retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g11670OsAffx.30935.1.S1_at11/1111+6480185..6480935hypothetical protein
LOC_Os11g11680OsAffx.30936.1.S1_at11/1111+6490267..6490677LGC1, putative
LOC_Os11g11694Os.45957.1.S1_at11/1111+6493100..6498258retrotransposon protein, putative, unclassified, expressed
LOC_Os11g11694Os.45957.2.S1_at5/1111+6493100..6498258retrotransposon protein, putative, unclassified, expressed
LOC_Os11g11694Os.45957.2.S1_x_at5/1111+6493100..6498258retrotransposon protein, putative, unclassified, expressed
LOC_Os11g11710Os.9643.1.S1_at11/1111+6505462..6506684expressed protein
LOC_Os11g11720OsAffx.7083.1.S1_x_at11/1111+6511935..6513287Serpin family protein
LOC_Os11g11720OsAffx.7083.1.S1_at11/1111+6511935..6513287Serpin family protein
LOC_Os11g11730Os.9607.1.S1_at11/1111+6515329..6517148expressed protein
LOC_Os11g11740OsAffx.30937.1.S1_at11/1111+6518181..6518816hypothetical protein
LOC_Os11g11750OsAffx.30938.1.S1_at11/1111+6521026..6521445hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45957.2.S1_x_at--178--7091Chr11:6497892..6497916 (25 bp)
GTCACTCAGGAATAACAGCCACTTA
LOC_Os11g11694
Os.45957.2.S1_x_at--578--6671Chr11:6497809..6497833 (25 bp)
GTTGCTTCTTGTGAGGTTTGTCAGC
LOC_Os11g11694
Os.45957.2.S1_x_at--68--9571Chr11:6497729..6497753 (25 bp)
TCTTCAGGCTTGGACCACCATCAGT
LOC_Os11g11694
Os.45957.2.S1_x_at--297--4591NONE
GCGAAGTTTATTTCCCTTTCACATC
NONE
Os.45957.2.S1_x_at--97--551NONE
ATCCCTTCACAGCTTTGCAAGTTGC
NONE
Os.45957.2.S1_x_at--993--5171NONE
GCAAGTTGCCACATTCTTTTATTAA
NONE
Os.45957.2.S1_x_at--36--8731NONE
TGTCTATGACATCTTTGGCATGCCC
NONE
Os.45957.2.S1_x_at--980--8493Chr11:6494207..6494231 (25 bp)
TGGCATGCCCCAAGTGATTATTTCG
LOC_Os11g11694
Os.45957.2.S1_x_at--607--171Chr11:6494170..6494194 (25 bp)
ATTTTCACTAGTGCTCTTTGGCAAG
LOC_Os11g11694
Os.45957.2.S1_x_at--1098--1571NONE
AGCTCTTATACCATCCTCAAACTGA
NONE
Os.45957.2.S1_x_at--1055--1551NONE
AGCTTATTTGCGTTGGGCTGGTCAT
NONE
Target Sequence 
GTCACTCAGGAATAACAGCCACTTATAACAGGATCAAAAANTTGTTTTATTGGCCTGGCATGAAGAAAGATGTGCAGAAG
TATGTTGCTTCTTGTGAGGTTTGTCAGCAAGCAAAACCTGAACATTGCAAAAGNCCTNGAAAATTGCAACCCCTACCAGT
CCCTCTTCAGGCTTGGACCACCATCAGTNTNGNNNNNNNCNNANNTTNGNNCNNNNNTNAANNNNANNNNANAATANNNN
TTNTNGTTGATAAATTCTCCAAATTTGCGAAGTTTATTTCCCTTTCACATCCCTTCACAGCTTTGCAAGTTGCCACATTC
TTTTATTAAGAATGTCTATGACATCTTTGGCATGCCCCAAGTGATTATTTCGGATCGCGATAAAATTTTCACTAGTGCTC
TTTGGCAAGAACTGGTCAAGNTGGCAGATGTGAAGCTCAATATGAGCTCTTATACCATCCTCAAACTGATGGACAGACAG
AGCGCTTGAATCAGNGTCTGGAGCTTATTTGCGTTGGGCTGGTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45957.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis