Browse Element(s) Details


Os.12698.1.S1_at

Description gb:AK105710.1
DB_XREF= gi:32990919
TID=Os.12698.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.12698 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-201-E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-201-E09, full insert sequence.
FL= gb:AK105710.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3598011/11expressed protein
LOC_Os11g116602/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g35920NANA7+21491369..21497524transposon protein, putative, unclassified
LOC_Os07g35930NANA7+21498291..21501852hypothetical protein
LOC_Os07g35940OsAffx.28771.1.S1_at10/117+21502121..21504662Beta-amylase, putative
LOC_Os07g35950OsAffx.16576.1.S1_at11/117+21508255..21509157hypothetical protein
LOC_Os07g35960OsAffx.30966.5.S1_at11/117+21511368..21515317expressed protein
LOC_Os07g35960OsAffx.30966.4.S1_x_at2/117+21511368..21515317expressed protein
LOC_Os07g35960Os.51465.1.S1_x_at1/117+21511368..21515317expressed protein
LOC_Os07g35960Os.51465.1.S1_at1/117+21511368..21515317expressed protein
LOC_Os07g35970OsAffx.28773.1.S1_at9/117+21517207..21518259Strictosidine synthase family protein
LOC_Os07g35980Os.12698.1.S1_at11/117+21518941..21521454expressed protein
LOC_Os07g35980Os.42235.1.S1_x_at2/117+21518941..21521454expressed protein
LOC_Os07g35980Os.42235.1.S1_at1/117+21518941..21521454expressed protein
LOC_Os07g35990OsAffx.28773.1.S1_at10/117+21529682..21530434Strictosidine synthase family protein
LOC_Os07g36000Os.27639.1.S1_x_at10/117+21531049..21535981transposon protein, putative, unclassified
LOC_Os07g36000OsAffx.8980.1.S1_at9/117+21531049..21535981transposon protein, putative, unclassified
LOC_Os07g36010Os.10827.1.S1_x_at10/117+21539647..21549225transposon protein, putative, unclassified
LOC_Os07g36010Os.46055.2.S1_x_at7/117+21539647..21549225transposon protein, putative, unclassified
LOC_Os07g36010OsAffx.9045.1.S1_at1/117+21539647..21549225transposon protein, putative, unclassified
LOC_Os07g36010OsAffx.9045.1.S1_x_at1/117+21539647..21549225transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12698.1.S1_at--120--7311Chr07:21520117..21520141 (25 bp)
GTGCGTCAGACGTGGTTTCGCAGAA
LOC_Os07g35980
Os.12698.1.S1_at--156--9151Chr07:21520118..21520142 (25 bp)
TGCGTCAGACGTGGTTTCGCAGAAT
LOC_Os07g35980
Os.12698.1.S1_at--26--6851Chr07:21520131..21520155 (25 bp)
GTTTCGCAGAATCTCGTCTGTGCCC
LOC_Os07g35980
Os.12698.1.S1_at--1007--10291Chr07:21520132..21520156 (25 bp)
TTTCGCAGAATCTCGTCTGTGCCCC
LOC_Os07g35980
Os.12698.1.S1_at--556--10631Chr07:21520133..21520157 (25 bp)
TTCGCAGAATCTCGTCTGTGCCCCT
LOC_Os07g35980
Os.12698.1.S1_at--365--5053Chr08:23309083..23309102 (20 bp)
GCAGAATCTCGTCTGTGCCCCTTTG
NONE
Os.12698.1.S1_at--718--6774Chr11:6477295..6477318 (24 bp)
GTTACGACTCTCCAGAGTTGTAATA
LOC_Os11g11660
Os.12698.1.S1_at--26--9951Chr07:21520280..21520304 (25 bp)
TACGACTCTCCAGAGTTGTAATATT
LOC_Os07g35980
Os.12698.1.S1_at--834--5712Chr11:6477300..6477391 (25 bp)
GACTCTCCAGAGTTGTAATATTGTA
LOC_Os11g11660
Os.12698.1.S1_at--947--1992Chr08:28109644..28109666 (22 bp)
ACTCTCCAGAGTTGTAATATTGTAT
NONE
Os.12698.1.S1_at--356--9492Chr10:13694105..13694297 (25 bp)
TCTCCAGAGTTGTAATATTGTATTT
NONE
Target Sequence 
GTGCGTCAGACGTGGTTTCGCAGAATCTCGTCTGTGCCCCTTTGTTGGCCTAGTGGCGGTCGGTCACGCTTAGTGGCGGC
CGATCCGGTGCTAGCCTTCTCCTGGGCGTGTGTGTTGGCGATGTCGGCGTGTGGGTGGTGGTATATTTTTTCCTTTTCCT
GGTTACGACTCTCCAGAGTTGTAATATTGTATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12698.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis