Browse Element(s) Details


Os.42235.1.S1_x_at

Description gb:NM_197507.1
DB_XREF= gi:37536373
TID=Os.42235.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.42235 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) unknown protein (OSJNBb0038A07.12), mRNA.
PROD=unknown protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g359802/11expressed protein
LOC_Os07g123701/11expressed protein
LOC_Os03g107001/11expressed protein
LOC_Os02g121201/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g35920NANA7+21491369..21497524transposon protein, putative, unclassified
LOC_Os07g35930NANA7+21498291..21501852hypothetical protein
LOC_Os07g35940OsAffx.28771.1.S1_at10/117+21502121..21504662Beta-amylase, putative
LOC_Os07g35950OsAffx.16576.1.S1_at11/117+21508255..21509157hypothetical protein
LOC_Os07g35960OsAffx.30966.5.S1_at11/117+21511368..21515317expressed protein
LOC_Os07g35960OsAffx.30966.4.S1_x_at2/117+21511368..21515317expressed protein
LOC_Os07g35960Os.51465.1.S1_x_at1/117+21511368..21515317expressed protein
LOC_Os07g35960Os.51465.1.S1_at1/117+21511368..21515317expressed protein
LOC_Os07g35970OsAffx.28773.1.S1_at9/117+21517207..21518259Strictosidine synthase family protein
LOC_Os07g35980Os.12698.1.S1_at11/117+21518941..21521454expressed protein
LOC_Os07g35980Os.42235.1.S1_x_at2/117+21518941..21521454expressed protein
LOC_Os07g35980Os.42235.1.S1_at1/117+21518941..21521454expressed protein
LOC_Os07g35990OsAffx.28773.1.S1_at10/117+21529682..21530434Strictosidine synthase family protein
LOC_Os07g36000Os.27639.1.S1_x_at10/117+21531049..21535981transposon protein, putative, unclassified
LOC_Os07g36000OsAffx.8980.1.S1_at9/117+21531049..21535981transposon protein, putative, unclassified
LOC_Os07g36010Os.10827.1.S1_x_at10/117+21539647..21549225transposon protein, putative, unclassified
LOC_Os07g36010Os.46055.2.S1_x_at7/117+21539647..21549225transposon protein, putative, unclassified
LOC_Os07g36010OsAffx.9045.1.S1_at1/117+21539647..21549225transposon protein, putative, unclassified
LOC_Os07g36010OsAffx.9045.1.S1_x_at1/117+21539647..21549225transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42235.1.S1_x_at--888--10510Chr08:23308593..23308793 (25 bp)
AGGTGGCTGGGTGCCGGCTCGGCGC
NONE
Os.42235.1.S1_x_at--842--471Chr10:20329021..20329045 (25 bp)
ATCGGTGCGTCAGCCATGGTTTCGA
NONE
Os.42235.1.S1_x_at--817--1692Chr10:20329010..20329034 (25 bp)
AGCCATGGTTTCGATCTCGTATGTG
NONE
Os.42235.1.S1_x_at--1115--811Chr10:20329006..20329030 (25 bp)
ATGGTTTCGATCTCGTATGTGCCCC
NONE
Os.42235.1.S1_x_at--172--6851Chr10:20329003..20329027 (25 bp)
GTTTCGATCTCGTATGTGCCCCTTT
NONE
Os.42235.1.S1_x_at--59--10611Chr10:20329001..20329025 (25 bp)
TTCGATCTCGTATGTGCCCCTTTGT
NONE
Os.42235.1.S1_x_at--262--754Chr08:23309091..23309113 (23 bp)
ATGTGCCCCTTTGTTGGCCTAGTGG
NONE
Os.42235.1.S1_x_at--967--9411Chr10:20328898..20328922 (25 bp)
TCGGCACGTGGGTGGTGCTATTTTT
NONE
Os.42235.1.S1_x_at--957--9251Chr10:20328864..20328888 (25 bp)
TCCTGGTTAAGACTCTCCGGGGTTG
NONE
Os.42235.1.S1_x_at--78--3752Chr07:155258..155282 (24 bp)
CTCTCCGGGGTTGTAATCTTATAAT
NONE
Os.42235.1.S1_x_at--316--10392Chr10:20328825..20328849 (25 bp)
TTTTCTGCTCTATCAATATCAATAG
NONE
Target Sequence 
AGGTGGCTGGGTGCCGGCTCGGCGCGAGAGGCGCGGGCGGCGGAGATGGAGGCCGGCTTGGCACAAGAGGCGCGGCCGAT
GAAGGGAGGCCGGATTGGCGCGAGAGGCGCGTCCGGTGGAGGAGGCTGGCTTGGCGCAGAGAGGCGCGGCCGGCGGTGGA
GGAGGCGACCTAGGTGTGAGGAGGAGCTGCCGGTGGGTGTGGCGCGGCCTTCGGCGCACGAAGGCTGGCCAGCGGGGGAC
GTCGGTGAAGGGGTCCCACATGTCGGCAAAGCTTGTGTGGTGGTGGAGCATCGGTGCGTCAGCCATGGTTTCGATCTCGT
ATGTGCCCCTTTGTTGGCCTAGTGGCGGTCGGTCACGCTTAGCGGCGGCCGATCCGGTGCTAGCCTTCTCCTAGGCGTGT
GTGTTGGCGATGTCGGCACGTGGGTGGTGCTATTTTTTTTTCCTTTTCCTGGTTAAGACTCTCCGGGGTTGTAATCTTAT
AATTTTTTTCTGCTCTATCAATATCAATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42235.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis