Browse Element(s) Details


OsAffx.28771.1.S1_at

Description tigr:9635.m03552
TID=OsAffx.28771.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=28516 beta-amylase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3594010/11Beta-amylase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g35900OsAffx.13097.1.S1_s_at11/117+21483129..21487020transposon protein, putative, unclassified
LOC_Os07g35910NANA7+21487545..21490730transposon protein, putative, unclassified
LOC_Os07g35920NANA7+21491369..21497524transposon protein, putative, unclassified
LOC_Os07g35930NANA7+21498291..21501852hypothetical protein
LOC_Os07g35940OsAffx.28771.1.S1_at10/117+21502121..21504662Beta-amylase, putative
LOC_Os07g35950OsAffx.16576.1.S1_at11/117+21508255..21509157hypothetical protein
LOC_Os07g35960OsAffx.30966.5.S1_at11/117+21511368..21515317expressed protein
LOC_Os07g35960OsAffx.30966.4.S1_x_at2/117+21511368..21515317expressed protein
LOC_Os07g35960Os.51465.1.S1_x_at1/117+21511368..21515317expressed protein
LOC_Os07g35960Os.51465.1.S1_at1/117+21511368..21515317expressed protein
LOC_Os07g35970OsAffx.28773.1.S1_at9/117+21517207..21518259Strictosidine synthase family protein
LOC_Os07g35980Os.12698.1.S1_at11/117+21518941..21521454expressed protein
LOC_Os07g35980Os.42235.1.S1_x_at2/117+21518941..21521454expressed protein
LOC_Os07g35980Os.42235.1.S1_at1/117+21518941..21521454expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005983biological_processstarch catabolism
GO:0009570cellular_componentchloroplast stroma
GO:0016161molecular_functionbeta-amylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28771.1.S1_at--908--4711NONE
GCTGGCAATCAAAATCTCCGGCATT
NONE
OsAffx.28771.1.S1_at--1028--3051Chr07:21503848..21503871 (24 bp)
AATCTCCGGCATTCATTGGTGGTAT
LOC_Os07g35940
OsAffx.28771.1.S1_at--110--6871Chr07:21503868..21503892 (25 bp)
GTATAGGGTTCCAAACCATGCAGCT
LOC_Os07g35940
OsAffx.28771.1.S1_at--633--5911Chr07:21503893..21503917 (25 bp)
GAGCTCACTGCTGGATACTACAACT
LOC_Os07g35940
OsAffx.28771.1.S1_at--39--871Chr07:21503930..21503954 (25 bp)
ATGGCTACAGAACCATCGCACGCAT
LOC_Os07g35940
OsAffx.28771.1.S1_at--339--4471Chr07:21503971..21503995 (25 bp)
GCCTGCGTTAACTTCACATGTGCTG
LOC_Os07g35940
OsAffx.28771.1.S1_at--695--1431Chr07:21504042..21504193 (25 bp)
AGAACTAGTCCAACAGGTCCTGAGT
LOC_Os07g35940
OsAffx.28771.1.S1_at--371--531Chr07:21504223..21504247 (25 bp)
ATGCGAAAACGCACTCGGTCGATAC
LOC_Os07g35940
OsAffx.28771.1.S1_at--140--7811Chr07:21504239..21504263 (25 bp)
GGTCGATACGATGCAACAGCTTACA
LOC_Os07g35940
OsAffx.28771.1.S1_at--1070--5271Chr07:21504304..21504328 (25 bp)
GAATGGACCTCCTGAGCACAAGCTA
LOC_Os07g35940
OsAffx.28771.1.S1_at--997--2691Chr07:21504323..21504347 (25 bp)
AAGCTATTTGGATTCACCTACCTCC
LOC_Os07g35940
Target Sequence 
GCTGGCAATCAAAATCTCCGGCATTCATTGGTGGTATAGGGTTCCAAACCATGCAGCTGAGCTCACTGCTGGATACTACA
ACTTGGACAACAGAGATGGCTACAGAACCATCGCACGCATGCTCACAAGGCACCGTGCCTGCGTTAACTTCACATGTGCT
GAGATGAGGGATTCTGAACAAAGCTCAGAGGCAAAGAGTGCACCAGAAGAACTAGTCCAACAGGTCCTGAGTGCTGGATG
GAGAGAGGGCTTACATGTGGCATGCGAAAACGCACTCGGTCGATACGATGCAACAGCTTACAACACAATACTAAGGAATT
CAAGGCCGACAGGCATCAACAAGAATGGACCTCCTGAGCACAAGCTATTTGGATTCACCTACCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28771.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis