Browse Element(s) Details


OsAffx.28773.1.S1_at

Description tigr:9635.m05023
TID=OsAffx.28773.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3599010/11Strictosidine synthase family protein
LOC_Os07g3604010/11Strictosidine synthase family protein
LOC_Os07g359709/11Strictosidine synthase family protein
LOC_Os07g360604/11Strictosidine synthase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g35950OsAffx.16576.1.S1_at11/117+21508255..21509157hypothetical protein
LOC_Os07g35960OsAffx.30966.5.S1_at11/117+21511368..21515317expressed protein
LOC_Os07g35960OsAffx.30966.4.S1_x_at2/117+21511368..21515317expressed protein
LOC_Os07g35960Os.51465.1.S1_x_at1/117+21511368..21515317expressed protein
LOC_Os07g35960Os.51465.1.S1_at1/117+21511368..21515317expressed protein
LOC_Os07g35970OsAffx.28773.1.S1_at9/117+21517207..21518259Strictosidine synthase family protein
LOC_Os07g35980Os.12698.1.S1_at11/117+21518941..21521454expressed protein
LOC_Os07g35980Os.42235.1.S1_x_at2/117+21518941..21521454expressed protein
LOC_Os07g35980Os.42235.1.S1_at1/117+21518941..21521454expressed protein
LOC_Os07g35990OsAffx.28773.1.S1_at10/117+21529682..21530434Strictosidine synthase family protein
LOC_Os07g36000Os.27639.1.S1_x_at10/117+21531049..21535981transposon protein, putative, unclassified
LOC_Os07g36000OsAffx.8980.1.S1_at9/117+21531049..21535981transposon protein, putative, unclassified
LOC_Os07g36010Os.10827.1.S1_x_at10/117+21539647..21549225transposon protein, putative, unclassified
LOC_Os07g36010Os.46055.2.S1_x_at7/117+21539647..21549225transposon protein, putative, unclassified
LOC_Os07g36010OsAffx.9045.1.S1_at1/117+21539647..21549225transposon protein, putative, unclassified
LOC_Os07g36010OsAffx.9045.1.S1_x_at1/117+21539647..21549225transposon protein, putative, unclassified
LOC_Os07g36020NANA7+21549834..21550448hypothetical protein
LOC_Os07g36030OsAffx.25936.1.S1_s_at9/117+21552898..21555936transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g36030OsAffx.25936.7.S1_s_at8/117+21552898..21555936transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g36030OsAffx.25936.2.S1_x_at6/117+21552898..21555936transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g36030OsAffx.25936.5.S1_x_at2/117+21552898..21555936transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009821biological_processalkaloid biosynthesis
GO:0016844molecular_functionstrictosidine synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28773.1.S1_at--20--1232Chr07:21557273..21557297 (25 bp)
AGTTCACCAACGGTGTCGACGTCAA
LOC_Os07g36040
OsAffx.28773.1.S1_at--291--8413Chr07:21557389..21557609 (25 bp)
GGCCGCCTGATGAAGTACGACCCGA
LOC_Os07g36040
OsAffx.28773.1.S1_at--8--1914Chr07:21563008..21563032 (25 bp)
ACGTGCTCCAGTCCGGAATGACGTA
LOC_Os07g36060
OsAffx.28773.1.S1_at--965--494Chr07:21563059..21563083 (25 bp)
ATCGGAGTCACCTCGTGGTGGCGCT
LOC_Os07g36060
OsAffx.28773.1.S1_at--167--8893Chr07:21557525..21557549 (25 bp)
TGAGGCACTGGATCGAGGGCCCCAA
LOC_Os07g36040
OsAffx.28773.1.S1_at--1056--9933Chr07:21557556..21557580 (25 bp)
TACGTCGGAGCCGTTCGCCGAGCTG
LOC_Os07g36040
OsAffx.28773.1.S1_at--803--9953Chr07:21557587..21557611 (25 bp)
TACCCGGACAACGTGAGGCCCGATG
LOC_Os07g36040
OsAffx.28773.1.S1_at--678--4753Chr07:21557634..21557658 (25 bp)
GCTGCACCGCGAGAAGACCGAGACG
LOC_Os07g36040
OsAffx.28773.1.S1_at--40--9273Chr07:21557681..21557705 (25 bp)
TCCTCGCCGTAAGGATCGGTCGCAA
LOC_Os07g36040
OsAffx.28773.1.S1_at--335--4113Chr07:21563314..21563338 (25 bp)
CGAAGAACGTCAGGCCAACGGAGGT
LOC_Os07g36060
OsAffx.28773.1.S1_at--1116--3232Chr07:21563357..21563379 (23 bp)
CAAGCTTTACTTGGGTTCAGTTGAA
LOC_Os07g36060
Target Sequence 
AGTTCACCAACGGTGTCGACGTCAACCAGGTCACCGGCGAGGTCTACTTCACCGACAGCAGCACGCGCTTCCAGCGATCC
CAGCACGAGANGGTCACGGCCACCGGCGACTCCACGGGCCGCCTGATGAAGTACGACCCGACGACGGGCTACCTCGACGT
GCTCCAGTCCGGAATGACGTACCCCAACGGNCTCGCNCTNAGCGCCGATCGGAGTCACCTCGTGGTGGCGCTGACGGGGC
CGTGCAAGCTGGTGAGGCACTGGATCGAGGGCCCCAAGGCCGGTACGTCGGAGCCGTTCGCCGAGCTGCCGGGCTACCCG
GACAACGTGAGGCCCGATGGGAAGGGAGGCTACTGGGTGGCGCTGCACCGCGAGAAGACCGAGACGCCGTATGGCTCGGA
CACCCACCTCCTCGCCGTAAGGATCGGTCGCAAGGGGAAGATCTTGCAGGAGTTGAGGGGGCCGAAGAACGTCAGGCCAA
CGGAGGTGATTGAGAGAGGCGGCGGCAAGCTTTACTTGGGTTCAGTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28773.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis