Browse Element(s) Details


OsAffx.30930.1.S1_s_at

Description tigr:9639.m01096
TID=OsAffx.30930.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AJ437283 DD1A protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1153011/11ZmEBE-1 protein, putative
LOC_Os11g1162011/11ZmEBE-1 protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11500OsAffx.30928.1.S1_at11/1111+6388257..6390071Serpin family protein, expressed
LOC_Os11g11500Os.17796.1.S1_s_at11/1111+6388257..6390071Serpin family protein, expressed
LOC_Os11g11510OsAffx.18803.1.S1_at11/1111+6394013..6395478hypothetical protein
LOC_Os11g11520OsAffx.30929.1.S1_x_at11/1111+6400556..6402126hypothetical protein
LOC_Os11g11520OsAffx.30929.1.S1_at10/1111+6400556..6402126hypothetical protein
LOC_Os11g11530OsAffx.30930.1.S1_at11/1111+6406306..6407899ZmEBE-1 protein, putative
LOC_Os11g11530OsAffx.30930.1.S1_s_at11/1111+6406306..6407899ZmEBE-1 protein, putative
LOC_Os11g11540OsAffx.30936.1.S1_at11/1111+6413041..6413457hypothetical protein
LOC_Os11g11540OsAffx.15878.1.S1_x_at1/1111+6413041..6413457hypothetical protein
LOC_Os11g11550Os.27620.2.S1_x_at11/1111+6415329..6419818NB-ARC domain containing protein, expressed
LOC_Os11g11550Os.27620.3.S1_at10/1111+6415329..6419818NB-ARC domain containing protein, expressed
LOC_Os11g11560NANA11+6426097..6426351hypothetical protein
LOC_Os11g11570NANA11+6430524..6430778hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30930.1.S1_s_at--1033--5752Chr11:6459945..6459969 (25 bp)
GACGCACTTCACTACAAGTTGGTTT
LOC_Os11g11620
OsAffx.30930.1.S1_s_at--697--10452Chr11:6460174..6460198 (25 bp)
TTAGATATGCGCTGTCCTGGATTCC
LOC_Os11g11620
OsAffx.30930.1.S1_s_at--927--12Chr11:6460194..6460218 (25 bp)
ATTCCAAAGGACAGGTGGCTCGCAC
LOC_Os11g11620
OsAffx.30930.1.S1_s_at--1034--1792Chr11:6460217..6460241 (25 bp)
ACCCATTCGTTCCTGGACAGGTGAT
LOC_Os11g11620
OsAffx.30930.1.S1_s_at--742--1232Chr11:6460413..6460437 (25 bp)
AACTCTGGTGACTGGGAAATCTACT
LOC_Os11g11620
OsAffx.30930.1.S1_s_at--116--1012Chr11:6460466..6460490 (25 bp)
AGGATACTATCCGAGATCTCTCTTT
LOC_Os11g11620
OsAffx.30930.1.S1_s_at--774--7672Chr11:6460578..6460602 (25 bp)
GGGATTGCTCCACCCAAAAATGCTG
LOC_Os11g11620
OsAffx.30930.1.S1_s_at--788--112Chr11:6460622..6460646 (25 bp)
ATTCTTTGATGCAGCTGGCAACGCC
LOC_Os11g11620
OsAffx.30930.1.S1_s_at--467--4553Chr11:6460644..6460668 (25 bp)
GCCCATCCAATTGACCATGATCTAG
LOC_Os11g11620
OsAffx.30930.1.S1_s_at--53--6432Chr11:6460662..6460686 (25 bp)
GATCTAGCACACGTATCAGATTGTT
LOC_Os11g11620
OsAffx.30930.1.S1_s_at--1154--6592Chr11:6460680..6460704 (25 bp)
GATTGTTACCCTGTCACTGATGTTA
LOC_Os11g11620
Target Sequence 
GACGCACTTCACTACAAGTTGGTTTGTTGAAGAATCCAAGAAAGGTTGTTTAGATATGCGCTGTCCTGGATTCCAAAGGA
CAGGTGGCTCGCACCCATTCGTTCCTGGACAGGTGATTAACCCTGTTTCCAGCAACTCTAGCAGGAAACAATACATTACT
GTCAGAGTATCCAAGGATCAAAACTCTGGTGACTGGGAAATCTACTTTGGTTTTGATGGGAAGGCCAAGGTTATAGGATA
CTATCCGAGATCTCTCTTTACATCCTTGTCAAATAAGCCAGTGAACATTGTGTTTGGGGGCTTTGCCTTATGGAAAGAAC
ATAAACCGAGTCCTCCGATGGGCAGTGGGATTGCTCCACCCAAAAATGCTGCATCATTTAGTAATCTCAAATTCTTTGAT
GCAGCTGGCAACGCCCATCCAATTGACCATGATCTAGCACACGTATCAGATTGTTACCCTGTCACTGATGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30930.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis